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Copper in PDB 2a4w: Crystal Structure of Mitomycin C-Binding Protein Complexed with Copper(II)-Bleomycin A2

Protein crystallography data

The structure of Crystal Structure of Mitomycin C-Binding Protein Complexed with Copper(II)-Bleomycin A2, PDB code: 2a4w was solved by N.Danshiitsoodol, C.A.De Pinho, Y.Matoba, T.Kumagai, M.Sugiyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 44.390, 60.670, 48.240, 90.00, 101.33, 90.00
R / Rfree (%) 20.5 / 24.4

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Mitomycin C-Binding Protein Complexed with Copper(II)-Bleomycin A2 (pdb code 2a4w). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Mitomycin C-Binding Protein Complexed with Copper(II)-Bleomycin A2, PDB code: 2a4w:

Copper binding site 1 out of 1 in 2a4w

Go back to Copper Binding Sites List in 2a4w
Copper binding site 1 out of 1 in the Crystal Structure of Mitomycin C-Binding Protein Complexed with Copper(II)-Bleomycin A2


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Mitomycin C-Binding Protein Complexed with Copper(II)-Bleomycin A2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu751

b:35.8
occ:1.00
NG A:BLM750 1.9 36.2 1.0
NJ A:BLM750 1.9 34.5 1.0
NH A:BLM750 2.0 34.6 1.0
NC A:BLM750 2.2 35.2 1.0
NB A:BLM750 2.3 34.5 1.0
C7 A:BLM750 2.8 36.8 1.0
C27 A:BLM750 2.8 34.5 1.0
C6 A:BLM750 2.9 36.4 1.0
C12 A:BLM750 2.9 36.5 1.0
C29 A:BLM750 2.9 34.4 1.0
C3 A:BLM750 2.9 34.6 1.0
C10 A:BLM750 2.9 36.9 1.0
C2 A:BLM750 3.0 34.3 1.0
C13 A:BLM750 3.1 34.4 1.0
C14 A:BLM750 3.2 36.2 1.0
C1 A:BLM750 3.5 34.6 1.0
OH1 A:BLM750 3.5 39.9 1.0
O A:HOH608 3.5 20.3 1.0
O1 A:BLM750 3.9 35.5 1.0
NK A:BLM750 4.0 31.2 1.0
NI A:BLM750 4.0 33.2 1.0
NE A:BLM750 4.0 38.6 1.0
C28 A:BLM750 4.0 33.8 1.0
O A:HOH653 4.0 18.9 1.0
C30 A:BLM750 4.1 32.6 1.0
O12 A:BLM750 4.1 37.0 1.0
NA A:BLM750 4.1 34.2 1.0
C9 A:BLM750 4.1 38.4 1.0
C5 A:BLM750 4.4 36.9 1.0
C8 A:BLM750 4.7 39.1 1.0
C63 A:BLM750 4.9 43.7 1.0
O56 A:BLM750 4.9 52.6 1.0

Reference:

N.Danshiitsoodol, C.A.De Pinho, Y.Matoba, T.Kumagai, M.Sugiyama. The Mitomycin C (Mmc)-Binding Protein From Mmc-Producing Microorganisms Protects From the Lethal Effect of Bleomycin: Crystallographic Analysis to Elucidate the Binding Mode of the Antibiotic to the Protein J.Mol.Biol. V. 360 398 2006.
ISSN: ISSN 0022-2836
PubMed: 16756991
DOI: 10.1016/J.JMB.2006.05.017
Page generated: Thu Sep 3 16:28:20 2020
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