Copper in PDB 1z9p: X-Ray Structure of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi

All present enzymatic activity of X-Ray Structure of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi:
1.15.1.1;

The structure of X-Ray Structure of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi, PDB code: 1z9p was solved by K.Djinovic Carugo, I.Toeroe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.32 / 1.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	71.410, 63.990, 73.970, 90.00, 118.04, 90.00
R / Rfree (%)	17 / 21.2

The structure of X-Ray Structure of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Copper atom in the X-Ray Structure of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi (pdb code 1z9p). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the X-Ray Structure of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi, PDB code: 1z9p:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the X-Ray Structure of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of X-Ray Structure of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu200 b:17.1 occ:1.00 NE2 A:HIS72 2.0 15.2 1.0 ND1 A:HIS70 2.0 13.7 1.0 NE2 A:HIS151 2.0 13.2 1.0 CE1 A:HIS72 2.9 14.7 1.0 CD2 A:HIS151 3.0 12.8 1.0 CE1 A:HIS70 3.0 13.5 1.0 CD2 A:HIS72 3.0 14.7 1.0 CG A:HIS70 3.0 11.7 1.0 CE1 A:HIS151 3.1 14.7 1.0 NE2 A:HIS95 3.1 20.3 1.0 O A:HOH272 3.3 27.1 1.0 CB A:HIS70 3.4 11.5 1.0 CD2 A:HIS95 3.6 22.3 1.0 CB A:MET149 3.9 13.1 1.0 CE1 A:HIS95 3.9 20.9 1.0 CG A:MET149 3.9 11.9 1.0 ND1 A:HIS72 4.1 13.7 1.0 NE2 A:HIS70 4.1 12.2 1.0 CG A:HIS151 4.1 13.8 1.0 ND1 A:HIS151 4.1 11.5 1.0 CG A:HIS72 4.1 14.5 1.0 CD2 A:HIS70 4.2 12.4 1.0 O A:HOH255 4.4 24.8 1.0 CA A:HIS70 4.4 12.1 1.0 N A:HIS70 4.4 11.0 1.0 CG A:HIS95 4.6 17.8 1.0 ND1 A:HIS95 4.7 17.2 1.0 O A:HIS70 4.7 12.7 1.0 C A:HIS70 4.8 11.1 1.0 O A:MET149 4.9 11.4 1.0

Copper binding site 2 out of 2 in the X-Ray Structure of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of X-Ray Structure of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu200 b:15.4 occ:1.00 NE2 B:HIS72 2.0 12.6 1.0 ND1 B:HIS70 2.0 12.7 1.0 NE2 B:HIS151 2.0 12.2 1.0 CE1 B:HIS70 3.0 14.9 1.0 CE1 B:HIS72 3.0 13.8 1.0 CD2 B:HIS72 3.0 13.5 1.0 CG B:HIS70 3.0 10.4 1.0 CD2 B:HIS151 3.0 12.6 1.0 CE1 B:HIS151 3.1 12.4 1.0 NE2 B:HIS95 3.2 15.4 1.0 CB B:HIS70 3.3 12.3 1.0 CD2 B:HIS95 3.5 18.3 1.0 O B:HOH269 3.8 26.9 1.0 CB B:MET149 3.9 13.6 1.0 CE1 B:HIS95 4.0 16.1 1.0 CG B:MET149 4.0 11.6 1.0 ND1 B:HIS72 4.1 14.9 1.0 NE2 B:HIS70 4.1 14.5 1.0 CD2 B:HIS70 4.1 12.8 1.0 CG B:HIS72 4.1 15.2 1.0 O B:HOH238 4.1 21.8 1.0 ND1 B:HIS151 4.1 12.2 1.0 CG B:HIS151 4.2 10.7 1.0 CA B:HIS70 4.3 10.5 1.0 N B:HIS70 4.4 11.0 1.0 CG B:HIS95 4.5 15.2 1.0 O B:HIS70 4.6 14.3 1.0 ND1 B:HIS95 4.6 13.8 1.0 C B:HIS70 4.8 14.0 1.0 O B:MET149 4.9 12.0 1.0

I.Toro, C.Petrutz, F.Pacello, M.D'orazio, A.Battistoni, K.Djinovic-Carugo. Structural Basis of Heme Binding in the Cu,Zn Superoxide Dismutase From Haemophilus Ducreyi. J.Mol.Biol. V. 386 406 2009.
ISSN: ISSN 0022-2836
PubMed: 19103206
DOI: 10.1016/J.JMB.2008.12.004