Chemical elements
  Copper
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    Cuprous Compounds
    Complex Copper Compounds
    Cupric Compounds
    PDB 1a2v-1bxu
    PDB 1bxv-1fwx
    PDB 1g3d-1j9t
    PDB 1jcv-1mfm
    PDB 1mg2-1paz
    PDB 1pcs-1sii
    PDB 1sjm-1w6w
    PDB 1w77-2afn
      1w77
      1w7c
      1w8e
      1wa0
      1wa1
      1wa2
      1wae
      1ws7
      1ws8
      1wx2
      1wx4
      1x9l
      1x9r
      1x9u
      1xb3
      1xb6
      1xme
      1xso
      1xtl
      1xtm
      1y3j
      1yai
      1yaz
      1yew
      1yi9
      1yik
      1yil
      1yip
      1yjk
      1yjt
      1yjv
      1ylb
      1yso
      1z9n
      1z9p
      1zdq
      1zds
      1zia
      1zib
      1zm5
      1zmg
      1zpu
      1zv2
      1zxi
      231d
      2a3t
      2a4w
      2aan
      2aeo
      2afn
    PDB 2ahk-2dv6
    PDB 2dws-2ggp
    PDB 2ghz-2mta
    PDB 2nrd-2vm3
    PDB 2vm4-2yah
    PDB 2yam-3bkt
    PDB 3bqv-3fyi
    PDB 3g5w-3mie
    PDB 3mif-3t6v
    PDB 3t6w-9pcy

Copper in the structure of Crystal Structure Of the Double Mutant Y88H-P104H of A Sod-Like Protein From Bacillus Subtilis. (pdb 1xtm)






The binding sites of Copper atom in the structure of Crystal Structure Of the Double Mutant Y88H-P104H of A Sod-Like Protein From Bacillus Subtilis. (pdb code 1xtm). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 1xtm structure was solved by V.CALDERONE, S.MANGANI, L.BANCI, M.BENVENUTI, I.BERTINI, A.FANTONI, M.S.VIEZZOLI, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)25.6-1.6
Space groupP21212
a (A)52.462
b (A)104.350
c (A)58.756
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)25.3
Rfree (%)26.6


Copper Binding Sites:

Copper binding site 1 out of 2 in 1xtm


Copper binding site 1 out of 2 in 1xtm
Click to enlarge
stereopicture of Copper binding site 1 out of 2 in 1xtm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 1xtm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His86, B: His88, B: His104, B: Ile164, B: His166, B: Hoh508,

conact list:


AtomAtomDistance (A)
CuO B:His864.97
CuNE2 B:His864.13
CuN B:His864.73
CuCB B:His863.44
CuND1 B:His862.05
CuCD2 B:His864.20
CuCE1 B:His863.00
CuCG B:His863.09
CuCA B:His864.62
CuNE2 B:His882.06
CuND1 B:His884.05
CuCD2 B:His883.22
CuCE1 B:His882.85
CuCG B:His884.25
CuNE2 B:His1043.19
CuCD2 B:His1043.63
CuCE1 B:His1044.22
CuCG B:His1044.76
CuO B:Ile1644.78
CuCB B:Ile1644.48
CuCG2 B:Ile1644.39
CuNE2 B:His1662.00
CuND1 B:His1664.06
CuCD2 B:His1663.00
CuCE1 B:His1662.96
CuCG B:His1664.12
CuO B:Hoh5082.81

interactive model:


Copper binding site 2 out of 2 in 1xtm


Copper binding site 2 out of 2 in 1xtm
Click to enlarge
stereopicture of Copper binding site 2 out of 2 in 1xtm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 1xtm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His86, A: His88, A: His104, A: Ile164, A: His166, A: Hoh531, A: Hoh541,

conact list:


AtomAtomDistance (A)
CuO A:His864.93
CuNE2 A:His864.20
CuN A:His864.44
CuCB A:His863.49
CuND1 A:His862.41
CuCD2 A:His864.18
CuC A:His864.95
CuCE1 A:His863.25
CuCG A:His863.17
CuCA A:His864.47
CuNE2 A:His882.23
CuND1 A:His884.16
CuCD2 A:His883.38
CuCE1 A:His882.96
CuCG A:His884.39
CuNE2 A:His1042.49
CuND1 A:His1044.35
CuCD2 A:His1043.19
CuCE1 A:His1043.42
CuCG A:His1044.27
CuO A:Ile1644.85
CuCB A:Ile1644.59
CuCG2 A:Ile1644.62
CuNE2 A:His1661.89
CuND1 A:His1663.95
CuCD2 A:His1662.91
CuCE1 A:His1662.84
CuCG A:His1664.01
CuO A:Hoh5313.20
CuO A:Hoh5414.74

interactive model:




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