Atomistry » Copper » PDB 1x9r-2ahl » 1xso
Atomistry »
  Copper »
    PDB 1x9r-2ahl »
      1xso »

Copper in PDB 1xso: Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution

Enzymatic activity of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution

All present enzymatic activity of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution:
1.15.1.1;

Protein crystallography data

The structure of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution, PDB code: 1xso was solved by K.Djinovic Carugo, A.Coda, A.Battistoni, M.T.Carri, F.Polticelli, A.Desideri, G.Rotilio, K.S.Wilson, M.Bolognesi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.49
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.450, 68.940, 58.760, 90.00, 90.00, 90.00
R / Rfree (%) 10.4 / 16.9

Other elements in 1xso:

The structure of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution (pdb code 1xso). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution, PDB code: 1xso:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1xso

Go back to Copper Binding Sites List in 1xso
Copper binding site 1 out of 2 in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1

b:13.2
occ:1.00
 ND1 A:HIS44 2.0 9.5 1.0
NE2 A:HIS61 2.1 11.7 1.0
NE2 A:HIS118 2.1 10.8 1.0
NE2 A:HIS46 2.2 7.3 1.0
O A:HOH167 2.3 24.1 1.0
CG A:HIS44 3.0 9.1 1.0
CE1 A:HIS44 3.0 11.2 1.0
CE1 A:HIS46 3.0 11.6 1.0
CE1 A:HIS118 3.0 10.5 1.0
CD2 A:HIS61 3.1 11.1 1.0
CE1 A:HIS61 3.1 12.8 1.0
CD2 A:HIS118 3.1 11.9 1.0
CB A:HIS44 3.2 11.0 1.0
CD2 A:HIS46 3.3 9.2 1.0
O A:HOH263 4.0 49.2 1.0
CD2 A:HIS44 4.1 10.7 1.0
NE2 A:HIS44 4.1 9.9 1.0
ND1 A:HIS118 4.1 11.9 1.0
ND1 A:HIS46 4.2 11.0 1.0
ND1 A:HIS61 4.2 9.1 1.0
CG A:HIS61 4.2 8.8 1.0
CG A:HIS118 4.2 11.1 1.0
CG A:HIS46 4.3 9.1 1.0
O A:HOH160 4.5 19.2 1.0
CA A:HIS44 4.7 8.0 1.0
O A:HOH164 4.8 22.6 1.0

Copper binding site 2 out of 2 in 1xso

Go back to Copper Binding Sites List in 1xso
Copper binding site 2 out of 2 in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu152

b:12.1
occ:1.00
 ND1 B:HIS44 2.0 9.2 1.0
NE2 B:HIS118 2.1 8.7 1.0
NE2 B:HIS61 2.1 10.1 1.0
NE2 B:HIS46 2.2 8.7 1.0
O B:HOH159 2.4 14.4 0.8
O B:HOH154 2.5 5.6 0.2
CE1 B:HIS46 3.0 11.1 1.0
CE1 B:HIS118 3.0 9.3 1.0
CE1 B:HIS44 3.0 9.8 1.0
CG B:HIS44 3.0 7.5 1.0
CD2 B:HIS61 3.0 10.5 1.0
CD2 B:HIS118 3.1 9.4 1.0
CE1 B:HIS61 3.1 13.1 1.0
CD2 B:HIS46 3.3 9.3 1.0
CB B:HIS44 3.3 10.3 1.0
NE2 B:HIS44 4.1 9.5 1.0
ND1 B:HIS118 4.1 9.4 1.0
CD2 B:HIS44 4.1 9.9 1.0
ND1 B:HIS46 4.2 9.1 1.0
CG B:HIS118 4.2 7.3 1.0
CG B:HIS61 4.2 8.4 1.0
ND1 B:HIS61 4.2 8.4 1.0
CG B:HIS46 4.3 7.8 1.0
O B:HOH169 4.3 20.7 1.0
CA B:HIS44 4.7 7.2 1.0
O B:HOH173 4.8 22.5 1.0
N B:HIS44 4.9 7.4 1.0
CG1 B:VAL116 5.0 13.4 1.0
CB B:VAL116 5.0 9.1 1.0

Reference:

K.Djinovic Carugo, A.Battistoni, M.T.Carri, F.Polticelli, A.Desideri, G.Rotilio, A.Coda, K.S.Wilson, M.Bolognesi. Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 A Resolution. Acta Crystallogr.,Sect.D V. 52 176 1996.
ISSN: ISSN 0907-4449
PubMed: 15299740
DOI: 10.1107/S0907444995007608
Page generated: Tue Jul 30 23:02:26 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy