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Copper in PDB 1xso: Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution

Enzymatic activity of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution

All present enzymatic activity of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution:
1.15.1.1;

Protein crystallography data

The structure of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution, PDB code: 1xso was solved by K.Djinovic Carugo, A.Coda, A.Battistoni, M.T.Carri, F.Polticelli, A.Desideri, G.Rotilio, K.S.Wilson, M.Bolognesi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.49
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.450, 68.940, 58.760, 90.00, 90.00, 90.00
R / Rfree (%) 10.4 / 16.9

Other elements in 1xso:

The structure of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution (pdb code 1xso). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution, PDB code: 1xso:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1xso

Go back to Copper Binding Sites List in 1xso
Copper binding site 1 out of 2 in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1

b:13.2
occ:1.00
ND1 A:HIS44 2.0 9.5 1.0
NE2 A:HIS61 2.1 11.7 1.0
NE2 A:HIS118 2.1 10.8 1.0
NE2 A:HIS46 2.2 7.3 1.0
O A:HOH167 2.3 24.1 1.0
CG A:HIS44 3.0 9.1 1.0
CE1 A:HIS44 3.0 11.2 1.0
CE1 A:HIS46 3.0 11.6 1.0
CE1 A:HIS118 3.0 10.5 1.0
CD2 A:HIS61 3.1 11.1 1.0
CE1 A:HIS61 3.1 12.8 1.0
CD2 A:HIS118 3.1 11.9 1.0
CB A:HIS44 3.2 11.0 1.0
CD2 A:HIS46 3.3 9.2 1.0
O A:HOH263 4.0 49.2 1.0
CD2 A:HIS44 4.1 10.7 1.0
NE2 A:HIS44 4.1 9.9 1.0
ND1 A:HIS118 4.1 11.9 1.0
ND1 A:HIS46 4.2 11.0 1.0
ND1 A:HIS61 4.2 9.1 1.0
CG A:HIS61 4.2 8.8 1.0
CG A:HIS118 4.2 11.1 1.0
CG A:HIS46 4.3 9.1 1.0
O A:HOH160 4.5 19.2 1.0
CA A:HIS44 4.7 8.0 1.0
O A:HOH164 4.8 22.6 1.0

Copper binding site 2 out of 2 in 1xso

Go back to Copper Binding Sites List in 1xso
Copper binding site 2 out of 2 in the Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu152

b:12.1
occ:1.00
ND1 B:HIS44 2.0 9.2 1.0
NE2 B:HIS118 2.1 8.7 1.0
NE2 B:HIS61 2.1 10.1 1.0
NE2 B:HIS46 2.2 8.7 1.0
O B:HOH159 2.4 14.4 0.8
O B:HOH154 2.5 5.6 0.2
CE1 B:HIS46 3.0 11.1 1.0
CE1 B:HIS118 3.0 9.3 1.0
CE1 B:HIS44 3.0 9.8 1.0
CG B:HIS44 3.0 7.5 1.0
CD2 B:HIS61 3.0 10.5 1.0
CD2 B:HIS118 3.1 9.4 1.0
CE1 B:HIS61 3.1 13.1 1.0
CD2 B:HIS46 3.3 9.3 1.0
CB B:HIS44 3.3 10.3 1.0
NE2 B:HIS44 4.1 9.5 1.0
ND1 B:HIS118 4.1 9.4 1.0
CD2 B:HIS44 4.1 9.9 1.0
ND1 B:HIS46 4.2 9.1 1.0
CG B:HIS118 4.2 7.3 1.0
CG B:HIS61 4.2 8.4 1.0
ND1 B:HIS61 4.2 8.4 1.0
CG B:HIS46 4.3 7.8 1.0
O B:HOH169 4.3 20.7 1.0
CA B:HIS44 4.7 7.2 1.0
O B:HOH173 4.8 22.5 1.0
N B:HIS44 4.9 7.4 1.0
CG1 B:VAL116 5.0 13.4 1.0
CB B:VAL116 5.0 9.1 1.0

Reference:

K.Djinovic Carugo, A.Battistoni, M.T.Carri, F.Polticelli, A.Desideri, G.Rotilio, A.Coda, K.S.Wilson, M.Bolognesi. Three-Dimensional Structure of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography at 1.5 A Resolution. Acta Crystallogr.,Sect.D V. 52 176 1996.
ISSN: ISSN 0907-4449
PubMed: 15299740
DOI: 10.1107/S0907444995007608
Page generated: Sun Dec 13 11:03:02 2020

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