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Copper in PDB 1x9u: Umecyanin From Horse Raddish- Crystal Structure of the Reduced Form

Protein crystallography data

The structure of Umecyanin From Horse Raddish- Crystal Structure of the Reduced Form, PDB code: 1x9u was solved by M.Koch, M.Velarde, M.D.Harrison, S.Echt, M.Fischer, A.Messerschmidt, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 92.650, 92.650, 47.700, 90.00, 90.00, 120.00
R / Rfree (%) 19.9 / 24.4

Copper Binding Sites:

The binding sites of Copper atom in the Umecyanin From Horse Raddish- Crystal Structure of the Reduced Form (pdb code 1x9u). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Umecyanin From Horse Raddish- Crystal Structure of the Reduced Form, PDB code: 1x9u:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1x9u

Go back to Copper Binding Sites List in 1x9u
Copper binding site 1 out of 2 in the Umecyanin From Horse Raddish- Crystal Structure of the Reduced Form


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Umecyanin From Horse Raddish- Crystal Structure of the Reduced Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu116

b:22.6
occ:1.00
ND1 A:HIS90 2.1 20.6 1.0
ND1 A:HIS44 2.2 23.3 1.0
SG A:CYS85 2.2 18.7 1.0
OE1 A:GLN95 2.5 17.9 1.0
CE1 A:HIS90 3.0 21.4 1.0
CG A:HIS90 3.0 21.4 1.0
CD A:GLN95 3.1 18.7 1.0
CG A:HIS44 3.1 20.2 1.0
CE1 A:HIS44 3.2 19.3 1.0
NE2 A:GLN95 3.2 20.0 1.0
CB A:CYS85 3.3 21.0 1.0
CB A:HIS90 3.3 18.7 1.0
CB A:HIS44 3.4 21.4 1.0
CA A:HIS44 3.5 21.1 1.0
O A:MET43 3.8 20.6 1.0
CB A:VAL87 4.0 22.6 1.0
NE2 A:HIS90 4.1 22.1 1.0
CD2 A:HIS90 4.2 20.1 1.0
NE2 A:HIS44 4.3 17.2 1.0
CD2 A:HIS44 4.3 19.5 1.0
CG A:GLN95 4.4 14.7 1.0
O A:VAL87 4.4 22.3 1.0
N A:HIS44 4.5 21.7 1.0
C A:MET43 4.5 22.5 1.0
CG2 A:VAL87 4.6 18.0 1.0
N A:ASP45 4.6 20.0 1.0
C A:HIS44 4.6 21.6 1.0
CA A:CYS85 4.7 20.9 1.0
N A:VAL87 4.7 21.1 1.0
CG1 A:VAL87 4.8 20.1 1.0
CA A:VAL87 4.8 21.3 1.0
CB A:GLN95 4.9 17.6 1.0
CA A:HIS90 4.9 20.5 1.0

Copper binding site 2 out of 2 in 1x9u

Go back to Copper Binding Sites List in 1x9u
Copper binding site 2 out of 2 in the Umecyanin From Horse Raddish- Crystal Structure of the Reduced Form


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Umecyanin From Horse Raddish- Crystal Structure of the Reduced Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu116

b:23.7
occ:1.00
ND1 B:HIS90 2.1 20.1 1.0
ND1 B:HIS44 2.2 22.9 1.0
SG B:CYS85 2.2 19.1 1.0
OE1 B:GLN95 2.5 18.0 1.0
CG B:HIS90 3.0 22.9 1.0
CE1 B:HIS90 3.1 21.1 1.0
CG B:HIS44 3.1 23.1 1.0
CD B:GLN95 3.1 19.2 1.0
NE2 B:GLN95 3.2 17.1 1.0
CE1 B:HIS44 3.2 19.3 1.0
CB B:HIS90 3.3 19.5 1.0
CB B:CYS85 3.3 21.1 1.0
CB B:HIS44 3.3 20.8 1.0
CA B:HIS44 3.5 18.7 1.0
O B:MET43 3.7 21.5 1.0
CB B:VAL87 4.0 20.3 1.0
CD2 B:HIS90 4.2 22.6 1.0
NE2 B:HIS90 4.2 21.2 1.0
CD2 B:HIS44 4.3 24.1 1.0
NE2 B:HIS44 4.3 23.3 1.0
O B:VAL87 4.4 20.6 1.0
N B:HIS44 4.5 20.3 1.0
CG B:GLN95 4.5 17.1 1.0
C B:MET43 4.5 21.6 1.0
N B:ASP45 4.6 20.4 1.0
C B:HIS44 4.6 20.1 1.0
CG2 B:VAL87 4.6 19.3 1.0
CA B:CYS85 4.7 19.2 1.0
N B:VAL87 4.8 22.0 1.0
CB B:GLN95 4.8 20.0 1.0
N B:ARG13 4.8 22.9 1.0
CA B:HIS90 4.8 20.6 1.0
CG1 B:VAL87 4.9 21.0 1.0
CA B:VAL87 4.9 20.2 1.0

Reference:

M.Koch, M.Velarde, M.D.Harrison, S.Echt, M.Fischer, A.Messerschmidt, C.Dennison. Crystal Structures of Oxidized and Reduced Stellacyanin From Horseradish Roots J.Am.Chem.Soc. V. 127 158 2005.
ISSN: ISSN 0002-7863
PubMed: 15631465
DOI: 10.1021/JA046184P
Page generated: Thu Sep 3 16:25:30 2020
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