Atomistry » Copper » PDB 1tmx-1x9l » 1uxl
Atomistry »
  Copper »
    PDB 1tmx-1x9l »
      1uxl »

Copper in PDB 1uxl: I113T Mutant of Human SOD1

Enzymatic activity of I113T Mutant of Human SOD1

All present enzymatic activity of I113T Mutant of Human SOD1:
1.15.1.1;

Protein crystallography data

The structure of I113T Mutant of Human SOD1, PDB code: 1uxl was solved by M.A.Hough, J.G.Grossmann, S.V.Antonyuk, R.W.Strange, P.A.Doucette, J.A.Rodriguez, L.J.Whitson, P.J.Hart, L.J.Hayward, J.S.Valentine, S.S.Hasnain, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.6
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 166.042, 203.546, 144.021, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 19.6

Other elements in 1uxl:

The structure of I113T Mutant of Human SOD1 also contains other interesting chemical elements:

Zinc (Zn) 10 atoms

Copper Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Copper atom in the I113T Mutant of Human SOD1 (pdb code 1uxl). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 11 binding sites of Copper where determined in the I113T Mutant of Human SOD1, PDB code: 1uxl:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Copper binding site 1 out of 11 in 1uxl

Go back to Copper Binding Sites List in 1uxl
Copper binding site 1 out of 11 in the I113T Mutant of Human SOD1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of I113T Mutant of Human SOD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu154

b:17.6
occ:0.50
CU A:CU154 0.0 17.6 0.5
CU A:CU154 1.1 11.7 0.5
ND1 A:HIS46 1.9 15.3 1.0
NE2 A:HIS120 2.1 11.9 1.0
NE2 A:HIS48 2.1 11.8 1.0
CG A:HIS46 2.7 13.8 1.0
CD2 A:HIS120 2.8 13.8 1.0
O1 A:SO4156 2.9 21.2 0.8
CE1 A:HIS46 3.0 14.3 1.0
CB A:HIS46 3.0 13.8 1.0
CD2 A:HIS48 3.0 12.5 1.0
CE1 A:HIS48 3.1 12.7 1.0
CE1 A:HIS120 3.2 14.0 1.0
NE2 A:HIS63 3.6 16.7 1.0
CD2 A:HIS63 3.9 15.9 1.0
CD2 A:HIS46 3.9 15.3 1.0
NE2 A:HIS46 4.0 13.9 1.0
CG A:HIS120 4.1 12.3 1.0
CB A:VAL118 4.1 10.9 1.0
CG A:HIS48 4.2 10.8 1.0
CG1 A:VAL118 4.2 11.8 1.0
CA A:HIS46 4.2 11.8 1.0
S A:SO4156 4.2 23.8 0.8
ND1 A:HIS120 4.2 13.4 1.0
ND1 A:HIS48 4.2 13.2 1.0
N A:HIS46 4.2 11.2 1.0
O2 A:SO4156 4.4 25.4 0.8
CE1 A:HIS63 4.5 15.3 1.0
O A:VAL118 4.6 11.0 1.0
O A:HIS46 4.6 11.8 1.0
C A:HIS46 4.7 11.4 1.0
CG2 A:VAL118 4.8 12.0 1.0
O4 A:SO4156 4.9 29.3 0.8
CG A:HIS63 4.9 13.3 1.0

Copper binding site 2 out of 11 in 1uxl

Go back to Copper Binding Sites List in 1uxl
Copper binding site 2 out of 11 in the I113T Mutant of Human SOD1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of I113T Mutant of Human SOD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu154

b:11.7
occ:0.50
CU A:CU154 0.0 11.7 0.5
CU A:CU154 1.1 17.6 0.5
O1 A:SO4156 1.9 21.2 0.8
NE2 A:HIS120 2.0 11.9 1.0
NE2 A:HIS48 2.1 11.8 1.0
ND1 A:HIS46 2.3 15.3 1.0
CE1 A:HIS48 2.7 12.7 1.0
CE1 A:HIS120 2.7 14.0 1.0
NE2 A:HIS63 3.1 16.7 1.0
CD2 A:HIS120 3.1 13.8 1.0
S A:SO4156 3.1 23.8 0.8
CE1 A:HIS46 3.1 14.3 1.0
CD2 A:HIS48 3.3 12.5 1.0
O2 A:SO4156 3.4 25.4 0.8
CG A:HIS46 3.4 13.8 1.0
CD2 A:HIS63 3.5 15.9 1.0
CB A:HIS46 3.8 13.8 1.0
O4 A:SO4156 3.9 29.3 0.8
ND1 A:HIS120 3.9 13.4 1.0
ND1 A:HIS48 3.9 13.2 1.0
CG A:HIS120 4.1 12.3 1.0
O3 A:SO4156 4.2 30.1 0.8
CE1 A:HIS63 4.2 15.3 1.0
CG A:HIS48 4.2 10.8 1.0
NE2 A:HIS46 4.3 13.9 1.0
O A:HOH2224 4.4 32.6 1.0
CD2 A:HIS46 4.5 15.3 1.0
CG1 A:VAL118 4.6 11.8 1.0
CG A:HIS63 4.7 13.3 1.0
CB A:VAL118 4.7 10.9 1.0
NE A:ARG143 4.8 13.1 1.0

Copper binding site 3 out of 11 in 1uxl

Go back to Copper Binding Sites List in 1uxl
Copper binding site 3 out of 11 in the I113T Mutant of Human SOD1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of I113T Mutant of Human SOD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu154

b:24.9
occ:1.00
NE2 B:HIS120 2.0 14.4 1.0
NE2 B:HIS48 2.0 15.2 1.0
O1 B:SO4156 2.2 26.2 0.5
ND1 B:HIS46 2.2 18.4 1.0
CE1 B:HIS48 2.7 14.0 1.0
CE1 B:HIS120 2.9 17.9 1.0
CD2 B:HIS120 3.0 15.0 1.0
CE1 B:HIS46 3.1 19.2 1.0
CD2 B:HIS48 3.2 15.4 1.0
CG B:HIS46 3.2 17.4 1.0
NE2 B:HIS63 3.4 21.3 1.0
S B:SO4156 3.4 26.1 0.5
CB B:HIS46 3.5 15.7 1.0
O2 B:SO4156 3.7 26.8 0.5
CD2 B:HIS63 3.8 22.7 1.0
ND1 B:HIS48 3.9 15.9 1.0
ND1 B:HIS120 4.0 17.6 1.0
O B:HOH2177 4.0 61.7 1.0
CG B:HIS120 4.1 15.7 1.0
CG B:HIS48 4.2 15.3 1.0
O4 B:SO4156 4.2 28.4 0.5
CE1 B:HIS63 4.3 21.9 1.0
NE2 B:HIS46 4.3 21.1 1.0
CD2 B:HIS46 4.3 19.9 1.0
O3 B:SO4156 4.5 28.1 0.5
CB B:VAL118 4.5 12.8 1.0
CG1 B:VAL118 4.5 14.3 1.0
CG B:HIS63 4.8 21.4 1.0
CA B:HIS46 4.9 15.4 1.0
ND1 B:HIS63 5.0 19.4 1.0

Copper binding site 4 out of 11 in 1uxl

Go back to Copper Binding Sites List in 1uxl
Copper binding site 4 out of 11 in the I113T Mutant of Human SOD1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of I113T Mutant of Human SOD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu154

b:25.8
occ:1.00
NE2 C:HIS120 1.9 12.5 1.0
NE2 C:HIS48 2.0 10.0 1.0
ND1 C:HIS46 2.2 15.3 1.0
O1 C:SO4157 2.7 24.1 0.7
CE1 C:HIS48 2.7 10.2 1.0
CD2 C:HIS120 2.9 12.6 1.0
CE1 C:HIS120 2.9 12.6 1.0
CD2 C:HIS48 3.1 12.4 1.0
CG C:HIS46 3.1 12.1 1.0
CE1 C:HIS46 3.1 16.4 1.0
NE2 C:HIS63 3.2 14.7 1.0
CB C:HIS46 3.4 12.4 1.0
CD2 C:HIS63 3.6 14.8 1.0
S C:SO4157 3.8 27.7 0.7
O3 C:SO4157 3.8 31.5 0.7
ND1 C:HIS48 3.9 11.3 1.0
ND1 C:HIS120 4.0 11.8 1.0
CG C:HIS120 4.0 9.9 1.0
CG C:HIS48 4.1 9.7 1.0
CB C:VAL118 4.2 9.0 1.0
CE1 C:HIS63 4.2 13.8 1.0
NE2 C:HIS46 4.2 13.2 1.0
CD2 C:HIS46 4.3 13.8 1.0
CG1 C:VAL118 4.3 10.1 1.0
O C:HOH2242 4.4 50.9 1.0
CA C:HIS46 4.6 10.8 1.0
N C:HIS46 4.7 10.3 1.0
O4 C:SO4157 4.7 30.1 0.7
O2 C:SO4157 4.7 30.6 0.7
CG C:HIS63 4.8 13.0 1.0
O C:VAL118 4.9 10.1 1.0
CG2 C:VAL118 4.9 10.9 1.0
O C:HIS46 5.0 10.2 1.0

Copper binding site 5 out of 11 in 1uxl

Go back to Copper Binding Sites List in 1uxl
Copper binding site 5 out of 11 in the I113T Mutant of Human SOD1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of I113T Mutant of Human SOD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu154

b:21.0
occ:1.00
O1 D:SO4156 1.5 15.3 0.5
NE2 D:HIS48 2.0 11.8 1.0
NE2 D:HIS120 2.0 15.4 1.0
ND1 D:HIS46 2.1 16.6 1.0
CE1 D:HIS48 2.9 13.9 1.0
CD2 D:HIS120 2.9 18.0 1.0
S D:SO4156 3.0 26.2 0.5
CE1 D:HIS120 3.0 17.2 1.0
CD2 D:HIS48 3.0 14.7 1.0
CE1 D:HIS46 3.0 18.4 1.0
CG D:HIS46 3.1 17.2 1.0
NE2 D:HIS63 3.3 20.2 1.0
CB D:HIS46 3.4 17.0 1.0
O3 D:SO4156 3.5 31.2 0.5
O2 D:SO4156 3.7 29.1 0.5
CD2 D:HIS63 3.7 19.1 1.0
O4 D:SO4156 3.9 30.7 0.5
ND1 D:HIS48 4.0 13.6 1.0
ND1 D:HIS120 4.0 16.7 1.0
CG D:HIS120 4.1 16.2 1.0
CG D:HIS48 4.1 12.2 1.0
NE2 D:HIS46 4.2 18.2 1.0
CD2 D:HIS46 4.2 18.5 1.0
CB D:VAL118 4.2 12.6 1.0
CG1 D:VAL118 4.3 13.1 1.0
CE1 D:HIS63 4.3 20.5 1.0
CA D:HIS46 4.6 15.5 1.0
N D:HIS46 4.6 15.7 1.0
O D:HOH2178 4.7 49.2 1.0
CG D:HIS63 4.8 20.2 1.0
CG2 D:VAL118 4.9 13.7 1.0
O D:VAL118 4.9 12.9 1.0
O D:HIS46 5.0 15.0 1.0

Copper binding site 6 out of 11 in 1uxl

Go back to Copper Binding Sites List in 1uxl
Copper binding site 6 out of 11 in the I113T Mutant of Human SOD1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of I113T Mutant of Human SOD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu154

b:30.4
occ:1.00
NE2 E:HIS120 2.0 19.0 1.0
NE2 E:HIS48 2.0 14.1 1.0
ND1 E:HIS46 2.2 19.4 1.0
O1 E:SO4156 2.6 32.1 0.5
CE1 E:HIS48 2.8 18.3 1.0
CD2 E:HIS120 2.9 17.5 1.0
CE1 E:HIS120 3.1 18.4 1.0
CD2 E:HIS48 3.1 17.2 1.0
CG E:HIS46 3.2 17.0 1.0
NE2 E:HIS63 3.2 23.6 1.0
CE1 E:HIS46 3.2 20.4 1.0
CB E:HIS46 3.4 16.1 1.0
CD2 E:HIS63 3.6 23.9 1.0
S E:SO4156 3.8 33.1 0.5
O2 E:SO4156 3.9 33.1 0.5
ND1 E:HIS48 4.0 16.3 1.0
CG E:HIS120 4.0 16.6 1.0
ND1 E:HIS120 4.1 17.4 1.0
CG E:HIS48 4.2 15.8 1.0
CE1 E:HIS63 4.2 23.2 1.0
NE2 E:HIS46 4.3 18.7 1.0
CD2 E:HIS46 4.3 17.7 1.0
CB E:VAL118 4.3 14.1 1.0
CG1 E:VAL118 4.3 15.3 1.0
O E:HOH2158 4.4 57.2 1.0
CA E:HIS46 4.6 14.9 1.0
O3 E:SO4156 4.7 34.1 0.5
N E:HIS46 4.7 14.9 1.0
CG E:HIS63 4.8 22.3 1.0
O4 E:SO4156 4.8 34.2 0.5
O E:VAL118 5.0 13.6 1.0

Copper binding site 7 out of 11 in 1uxl

Go back to Copper Binding Sites List in 1uxl
Copper binding site 7 out of 11 in the I113T Mutant of Human SOD1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of I113T Mutant of Human SOD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu154

b:23.5
occ:1.00
NE2 F:HIS120 1.9 10.2 1.0
NE2 F:HIS48 2.0 9.6 1.0
ND1 F:HIS46 2.1 14.5 1.0
O1 F:SO4156 2.6 14.5 0.5
CE1 F:HIS48 2.8 10.1 1.0
CD2 F:HIS120 2.9 12.8 1.0
CE1 F:HIS120 2.9 12.3 1.0
CE1 F:HIS46 3.0 15.2 1.0
CG F:HIS46 3.1 12.0 1.0
CD2 F:HIS48 3.1 11.6 1.0
NE2 F:HIS63 3.3 15.4 1.0
CB F:HIS46 3.4 12.5 1.0
CD2 F:HIS63 3.7 15.9 1.0
S F:SO4156 3.8 19.6 0.5
O2 F:SO4156 3.8 22.7 0.5
ND1 F:HIS120 4.0 10.5 1.0
ND1 F:HIS48 4.0 11.4 1.0
CG F:HIS120 4.0 9.8 1.0
NE2 F:HIS46 4.2 13.8 1.0
CG F:HIS48 4.2 9.0 1.0
CD2 F:HIS46 4.2 13.5 1.0
CE1 F:HIS63 4.2 12.4 1.0
CB F:VAL118 4.2 8.9 1.0
CG1 F:VAL118 4.3 10.4 1.0
O F:HOH2281 4.4 33.8 1.0
CA F:HIS46 4.6 10.0 1.0
O4 F:SO4156 4.6 20.7 0.5
N F:HIS46 4.7 9.5 1.0
CG F:HIS63 4.8 13.5 1.0
O3 F:SO4156 4.8 21.1 0.5
CG2 F:VAL118 4.8 9.4 1.0
O F:VAL118 4.9 9.6 1.0

Copper binding site 8 out of 11 in 1uxl

Go back to Copper Binding Sites List in 1uxl
Copper binding site 8 out of 11 in the I113T Mutant of Human SOD1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of I113T Mutant of Human SOD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cu154

b:14.9
occ:0.50
NE2 G:HIS48 1.9 12.6 1.0
NE2 G:HIS120 2.0 14.5 1.0
ND1 G:HIS46 2.1 14.2 1.0
CE1 G:HIS48 2.8 13.2 1.0
CD2 G:HIS120 2.9 14.3 1.0
CE1 G:HIS120 3.0 13.0 1.0
CD2 G:HIS48 3.0 12.5 1.0
CG G:HIS46 3.1 12.6 1.0
NE2 G:HIS63 3.1 15.2 1.0
CE1 G:HIS46 3.1 14.6 1.0
O G:HOH2141 3.2 23.8 1.0
CB G:HIS46 3.3 12.8 1.0
O G:HOH2250 3.4 35.1 1.0
CD2 G:HIS63 3.5 15.5 1.0
ND1 G:HIS48 4.0 13.5 1.0
CG G:HIS120 4.0 10.5 1.0
ND1 G:HIS120 4.0 11.0 1.0
CE1 G:HIS63 4.1 13.2 1.0
CG G:HIS48 4.1 11.7 1.0
CB G:VAL118 4.2 10.6 1.0
CD2 G:HIS46 4.2 13.6 1.0
NE2 G:HIS46 4.2 13.9 1.0
CG1 G:VAL118 4.3 12.3 1.0
CA G:HIS46 4.5 11.1 1.0
N G:HIS46 4.5 10.6 1.0
CG G:HIS63 4.6 13.5 1.0
O G:VAL118 4.8 10.9 1.0
O G:HIS46 4.8 11.7 1.0
CG2 G:VAL118 4.9 11.1 1.0
C G:HIS46 4.9 10.9 1.0
ND1 G:HIS63 4.9 12.0 1.0

Copper binding site 9 out of 11 in 1uxl

Go back to Copper Binding Sites List in 1uxl
Copper binding site 9 out of 11 in the I113T Mutant of Human SOD1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of I113T Mutant of Human SOD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cu154

b:22.8
occ:1.00
NE2 H:HIS120 2.0 10.1 1.0
NE2 H:HIS48 2.0 9.6 1.0
ND1 H:HIS46 2.1 13.0 1.0
O1 H:SO4156 2.8 15.5 0.5
CD2 H:HIS120 2.9 11.8 1.0
CE1 H:HIS48 2.9 11.4 1.0
CE1 H:HIS120 3.0 12.9 1.0
CG H:HIS46 3.0 10.8 1.0
CE1 H:HIS46 3.1 15.3 1.0
CD2 H:HIS48 3.1 11.8 1.0
NE2 H:HIS63 3.2 13.7 1.0
CB H:HIS46 3.3 11.5 1.0
CD2 H:HIS63 3.6 14.5 1.0
S H:SO4156 3.9 22.2 0.5
CG H:HIS120 4.0 9.0 1.0
ND1 H:HIS120 4.0 10.0 1.0
ND1 H:HIS48 4.0 11.5 1.0
O2 H:SO4156 4.1 26.1 0.5
CE1 H:HIS63 4.1 13.1 1.0
CG H:HIS48 4.1 9.9 1.0
NE2 H:HIS46 4.2 13.8 1.0
CB H:VAL118 4.2 8.9 1.0
CD2 H:HIS46 4.2 13.0 1.0
CG1 H:VAL118 4.3 11.4 1.0
CA H:HIS46 4.5 9.8 1.0
O H:HOH2291 4.5 42.0 1.0
N H:HIS46 4.6 8.9 1.0
O4 H:SO4156 4.6 21.5 0.5
CG H:HIS63 4.7 12.0 1.0
O H:VAL118 4.8 10.1 1.0
CG2 H:VAL118 4.9 10.2 1.0
O H:HIS46 4.9 10.0 1.0
O3 H:SO4156 4.9 25.3 0.5
ND1 H:HIS63 4.9 12.1 1.0
C H:HIS46 5.0 8.9 1.0

Copper binding site 10 out of 11 in 1uxl

Go back to Copper Binding Sites List in 1uxl
Copper binding site 10 out of 11 in the I113T Mutant of Human SOD1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of I113T Mutant of Human SOD1 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cu154

b:24.6
occ:1.00
NE2 I:HIS120 1.9 13.3 1.0
NE2 I:HIS48 2.0 11.8 1.0
ND1 I:HIS46 2.1 16.5 1.0
O4 I:SO4156 2.7 38.7 1.0
CE1 I:HIS48 2.8 13.1 1.0
CD2 I:HIS120 2.9 13.9 1.0
CE1 I:HIS120 2.9 14.0 1.0
CG I:HIS46 3.1 13.8 1.0
CD2 I:HIS48 3.1 13.8 1.0
CE1 I:HIS46 3.1 17.0 1.0
NE2 I:HIS63 3.2 16.0 1.0
CB I:HIS46 3.3 13.1 1.0
CD2 I:HIS63 3.6 15.8 1.0
S I:SO4156 3.8 41.7 1.0
O3 I:SO4156 3.9 43.8 1.0
O I:HOH2245 3.9 41.3 1.0
ND1 I:HIS120 4.0 12.3 1.0
ND1 I:HIS48 4.0 12.6 1.0
CG I:HIS120 4.0 10.9 1.0
CG I:HIS48 4.2 11.4 1.0
CE1 I:HIS63 4.2 15.1 1.0
CB I:VAL118 4.2 9.9 1.0
NE2 I:HIS46 4.2 16.0 1.0
CD2 I:HIS46 4.2 16.1 1.0
CG1 I:VAL118 4.3 11.8 1.0
CA I:HIS46 4.5 11.8 1.0
N I:HIS46 4.6 11.1 1.0
O1 I:SO4156 4.6 43.7 1.0
CG I:HIS63 4.7 16.1 1.0
CG2 I:VAL118 4.9 11.4 1.0
O I:VAL118 4.9 11.3 1.0
O2 I:SO4156 4.9 44.8 1.0
O I:HIS46 5.0 12.8 1.0
ND1 I:HIS63 5.0 13.1 1.0
C I:HIS46 5.0 12.2 1.0

Reference:

M.A.Hough, J.G.Grossmann, S.V.Antonyuk, R.W.Strange, P.A.Doucette, J.A.Rodriguez, L.J.Whitson, P.J.Hart, L.J.Hayward, J.S.Valentine, S.S.Hasnain. Dimer Destabilization in Superoxide Dismutase May Result in Disease-Causing Properties: Structures of Motor Neuron Disease Mutants Proc.Natl.Acad.Sci.Usa V. 101 5976 2004.
ISSN: ISSN 0027-8424
PubMed: 15056757
DOI: 10.1073/PNAS.0305143101
Page generated: Sun Dec 13 11:02:31 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy