Atomistry » Copper » PDB 1rju-1tl4 » 1sdd
Atomistry »
  Copper »
    PDB 1rju-1tl4 »
      1sdd »

Copper in PDB 1sdd: Crystal Structure of Bovine Factor Vai

Protein crystallography data

The structure of Crystal Structure of Bovine Factor Vai, PDB code: 1sdd was solved by T.E.Adams, M.F.Hockin, K.G.Mann, S.J.Everse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.370, 86.560, 229.200, 90.00, 90.00, 90.00
R / Rfree (%) 25.2 / 29.6

Other elements in 1sdd:

The structure of Crystal Structure of Bovine Factor Vai also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Bovine Factor Vai (pdb code 1sdd). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Bovine Factor Vai, PDB code: 1sdd:

Copper binding site 1 out of 1 in 1sdd

Go back to Copper Binding Sites List in 1sdd
Copper binding site 1 out of 1 in the Crystal Structure of Bovine Factor Vai


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Bovine Factor Vai within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu2190

b:65.7
occ:1.00
OD1 B:ASP1844 2.2 57.5 1.0
ND1 B:HIS1802 2.3 43.9 1.0
OD2 B:ASP1844 2.4 51.8 1.0
NE2 B:HIS1804 2.6 59.2 1.0
CG B:ASP1844 2.6 53.4 1.0
CD2 B:HIS1804 3.2 57.4 1.0
CG B:HIS1802 3.2 44.8 1.0
CE1 B:HIS1802 3.3 45.6 1.0
CB B:HIS1802 3.5 44.5 1.0
CE1 B:HIS1804 3.8 59.1 1.0
CB B:GLU1846 3.9 60.0 1.0
CB B:ASP1844 4.2 49.7 1.0
NE2 B:HIS1802 4.4 45.5 1.0
CD2 B:HIS1802 4.4 43.9 1.0
O B:HIS1802 4.4 44.0 1.0
CG B:HIS1804 4.5 56.5 1.0
OH A:TYR145 4.5 85.9 1.0
OE1 B:GLU1846 4.7 70.0 1.0
CE1 A:HIS85 4.7 68.0 1.0
CA B:GLU1846 4.7 56.9 1.0
OE1 B:GLN1851 4.7 33.0 1.0
CA B:HIS1802 4.7 44.9 1.0
ND1 B:HIS1804 4.8 55.9 1.0
C B:HIS1802 4.8 45.6 1.0
CD B:GLU1846 4.9 67.8 1.0
N B:ASP1844 4.9 44.5 1.0
O B:ASP1844 4.9 45.3 1.0
N B:GLU1846 4.9 54.3 1.0
CE1 A:TYR147 4.9 63.8 1.0
CA B:ASP1844 4.9 46.4 1.0
CG B:GLU1846 5.0 62.4 1.0

Reference:

T.E.Adams, M.F.Hockin, K.G.Mann, S.J.Everse. The Crystal Structure of Activated Protein C-Inactivated Bovine Factor Va: Implications For Cofactor Function. Proc.Natl.Acad.Sci.Usa V. 101 8918 2004.
ISSN: ISSN 0027-8424
PubMed: 15184653
DOI: 10.1073/PNAS.0403072101
Page generated: Sun Dec 13 11:01:52 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy