Copper in PDB 1sdd: Crystal Structure of Bovine Factor Vai

The structure of Crystal Structure of Bovine Factor Vai, PDB code: 1sdd was solved by T.E.Adams, M.F.Hockin, K.G.Mann, S.J.Everse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	63.370, 86.560, 229.200, 90.00, 90.00, 90.00
R / Rfree (%)	25.2 / 29.6

The structure of Crystal Structure of Bovine Factor Vai also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Copper atom in the Crystal Structure of Bovine Factor Vai (pdb code 1sdd). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Bovine Factor Vai, PDB code: 1sdd:

Copper binding site 1 out of 1 in the Crystal Structure of Bovine Factor Vai


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Bovine Factor Vai within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu2190 b:65.7 occ:1.00 OD1 B:ASP1844 2.2 57.5 1.0 ND1 B:HIS1802 2.3 43.9 1.0 OD2 B:ASP1844 2.4 51.8 1.0 NE2 B:HIS1804 2.6 59.2 1.0 CG B:ASP1844 2.6 53.4 1.0 CD2 B:HIS1804 3.2 57.4 1.0 CG B:HIS1802 3.2 44.8 1.0 CE1 B:HIS1802 3.3 45.6 1.0 CB B:HIS1802 3.5 44.5 1.0 CE1 B:HIS1804 3.8 59.1 1.0 CB B:GLU1846 3.9 60.0 1.0 CB B:ASP1844 4.2 49.7 1.0 NE2 B:HIS1802 4.4 45.5 1.0 CD2 B:HIS1802 4.4 43.9 1.0 O B:HIS1802 4.4 44.0 1.0 CG B:HIS1804 4.5 56.5 1.0 OH A:TYR145 4.5 85.9 1.0 OE1 B:GLU1846 4.7 70.0 1.0 CE1 A:HIS85 4.7 68.0 1.0 CA B:GLU1846 4.7 56.9 1.0 OE1 B:GLN1851 4.7 33.0 1.0 CA B:HIS1802 4.7 44.9 1.0 ND1 B:HIS1804 4.8 55.9 1.0 C B:HIS1802 4.8 45.6 1.0 CD B:GLU1846 4.9 67.8 1.0 N B:ASP1844 4.9 44.5 1.0 O B:ASP1844 4.9 45.3 1.0 N B:GLU1846 4.9 54.3 1.0 CE1 A:TYR147 4.9 63.8 1.0 CA B:ASP1844 4.9 46.4 1.0 CG B:GLU1846 5.0 62.4 1.0

T.E.Adams, M.F.Hockin, K.G.Mann, S.J.Everse. The Crystal Structure of Activated Protein C-Inactivated Bovine Factor Va: Implications For Cofactor Function. Proc.Natl.Acad.Sci.Usa V. 101 8918 2004.
ISSN: ISSN 0027-8424
PubMed: 15184653
DOI: 10.1073/PNAS.0403072101