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Copper in PDB 1rzq: Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0

Enzymatic activity of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0

All present enzymatic activity of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0:
1.7.2.1;

Protein crystallography data

The structure of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0, PDB code: 1rzq was solved by H.T.Li, C.Wang, T.Chang, W.C.Chang, M.Y.Liu, J.Le Gall, L.L.Gui, J.P.Zhang, X.M.An, W.R.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 99.020, 117.440, 122.800, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 20.8

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 (pdb code 1rzq). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0, PDB code: 1rzq:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 1rzq

Go back to Copper Binding Sites List in 1rzq
Copper binding site 1 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:27.4
occ:1.00
 ND1 A:HIS145 2.1 15.7 1.0
ND1 A:HIS95 2.2 18.7 1.0
SG A:CYS136 2.2 22.0 1.0
SD A:MET150 2.4 23.5 1.0
CE1 A:HIS145 3.0 16.1 1.0
CE1 A:HIS95 3.1 20.6 1.0
CB A:CYS136 3.1 17.6 1.0
CG A:HIS145 3.2 17.1 1.0
CG A:HIS95 3.2 20.1 1.0
CE A:MET150 3.3 25.9 1.0
CB A:HIS95 3.6 20.0 1.0
CB A:HIS145 3.6 14.3 1.0
CG A:MET150 4.0 21.1 1.0
CA A:HIS95 4.0 19.7 1.0
CG A:PRO138 4.1 21.5 1.0
NE2 A:HIS145 4.2 16.3 1.0
NE2 A:HIS95 4.2 21.6 1.0
CD2 A:HIS145 4.3 16.3 1.0
O A:LEU94 4.3 19.9 1.0
CD2 A:HIS95 4.3 20.9 1.0
SD A:MET62 4.3 18.2 1.0
CB A:MET150 4.3 15.7 1.0
CD A:PRO138 4.6 19.6 1.0
CA A:CYS136 4.6 16.7 1.0
CA A:HIS145 4.7 15.9 1.0
N A:ASN96 4.8 20.0 1.0
CB A:MET62 4.8 16.0 1.0
N A:HIS95 5.0 20.1 1.0

Copper binding site 2 out of 6 in 1rzq

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Copper binding site 2 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:19.4
occ:1.00
 O A:HOH3006 2.0 11.2 1.0
NE2 A:HIS100 2.0 15.2 1.0
NE2 B:HIS306 2.1 12.4 1.0
NE2 A:HIS135 2.2 16.4 1.0
CE1 A:HIS100 2.9 14.3 1.0
CE1 B:HIS306 3.0 11.5 1.0
CD2 A:HIS100 3.1 12.8 1.0
CD2 A:HIS135 3.1 14.3 1.0
CD2 B:HIS306 3.2 11.6 1.0
CE1 A:HIS135 3.2 15.3 1.0
OD2 A:ASP98 3.2 33.1 1.0
ND1 A:HIS100 4.1 15.8 1.0
CG A:HIS100 4.2 15.1 1.0
ND1 B:HIS306 4.2 10.6 1.0
NE2 B:HIS255 4.2 13.4 1.0
CG A:HIS135 4.3 14.9 1.0
CG B:HIS306 4.3 13.2 1.0
ND1 A:HIS135 4.3 15.6 1.0
CG A:ASP98 4.3 28.4 1.0
CE1 B:HIS255 4.4 15.2 1.0
CD2 B:HIS255 4.5 12.3 1.0
ND1 B:HIS255 4.8 14.3 1.0
CG B:HIS255 4.9 14.7 1.0
OD1 A:ASP98 5.0 25.9 1.0
CD2 B:LEU308 5.0 13.2 1.0
O B:HOH3028 5.0 15.2 1.0

Copper binding site 3 out of 6 in 1rzq

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Copper binding site 3 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu501

b:27.2
occ:1.00
 ND1 B:HIS95 2.1 24.7 1.0
ND1 B:HIS145 2.2 23.2 1.0
SG B:CYS136 2.3 24.0 1.0
SD B:MET150 2.4 24.1 1.0
CE1 B:HIS95 3.0 22.8 1.0
CE1 B:HIS145 3.1 22.8 1.0
CB B:CYS136 3.2 20.9 1.0
CG B:HIS95 3.2 23.5 1.0
CE B:MET150 3.2 24.9 1.0
CG B:HIS145 3.3 22.5 1.0
CB B:HIS95 3.6 23.6 1.0
CB B:HIS145 3.6 19.5 1.0
CG B:MET150 3.8 21.8 1.0
CA B:HIS95 4.0 23.8 1.0
NE2 B:HIS95 4.1 24.3 1.0
CG B:PRO138 4.2 27.1 1.0
CD2 B:HIS95 4.2 23.6 1.0
O B:LEU94 4.2 22.5 1.0
NE2 B:HIS145 4.3 22.5 1.0
CB B:MET150 4.3 19.3 1.0
CD2 B:HIS145 4.4 22.4 1.0
SD B:MET62 4.4 21.4 1.0
CA B:CYS136 4.6 18.7 1.0
CD B:PRO138 4.6 23.7 1.0
CA B:HIS145 4.8 18.6 1.0
CB B:MET62 4.8 20.7 1.0
N B:ASN96 4.8 24.1 1.0

Copper binding site 4 out of 6 in 1rzq

Go back to Copper Binding Sites List in 1rzq
Copper binding site 4 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu502

b:21.2
occ:1.00
 O B:HOH3005 2.0 10.0 1.0
NE2 B:HIS100 2.1 17.4 1.0
NE2 B:HIS135 2.1 15.3 1.0
NE2 C:HIS306 2.2 16.8 1.0
CE1 B:HIS100 2.9 15.7 1.0
CE1 C:HIS306 3.1 15.1 1.0
CD2 B:HIS135 3.1 13.3 1.0
CD2 B:HIS100 3.1 16.4 1.0
CE1 B:HIS135 3.1 13.6 1.0
CD2 C:HIS306 3.2 15.1 1.0
OD2 B:ASP98 3.3 33.7 1.0
ND1 B:HIS100 4.1 15.9 1.0
NE2 C:HIS255 4.2 18.0 1.0
CG B:HIS100 4.2 16.5 1.0
ND1 B:HIS135 4.2 14.9 1.0
ND1 C:HIS306 4.2 16.1 1.0
CG B:HIS135 4.2 13.5 1.0
CG C:HIS306 4.3 16.6 1.0
CG B:ASP98 4.4 29.7 1.0
CE1 C:HIS255 4.4 17.7 1.0
CD2 C:HIS255 4.5 16.6 1.0
ND1 C:HIS255 4.8 18.2 1.0
O C:HOH3066 4.9 24.1 1.0
CG C:HIS255 4.9 17.2 1.0
CD2 C:LEU308 5.0 14.0 1.0

Copper binding site 5 out of 6 in 1rzq

Go back to Copper Binding Sites List in 1rzq
Copper binding site 5 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu501

b:26.9
occ:1.00
 ND1 C:HIS95 2.1 14.8 1.0
ND1 C:HIS145 2.2 21.9 1.0
SG C:CYS136 2.2 20.3 1.0
SD C:MET150 2.5 21.3 1.0
CE1 C:HIS95 3.1 14.1 1.0
CE1 C:HIS145 3.1 23.4 1.0
CB C:CYS136 3.1 15.8 1.0
CG C:HIS95 3.2 15.3 1.0
CG C:HIS145 3.2 20.9 1.0
CE C:MET150 3.3 18.1 1.0
CB C:HIS95 3.5 15.4 1.0
CB C:HIS145 3.6 18.4 1.0
CA C:HIS95 3.9 14.0 1.0
CG C:MET150 4.0 19.8 1.0
O C:LEU94 4.2 15.7 1.0
NE2 C:HIS95 4.2 14.7 1.0
NE2 C:HIS145 4.2 22.8 1.0
CG C:PRO138 4.2 22.7 1.0
CD2 C:HIS95 4.3 14.7 1.0
CD2 C:HIS145 4.3 22.0 1.0
CB C:MET150 4.3 18.7 1.0
SD C:MET62 4.3 21.6 1.0
CA C:CYS136 4.6 15.4 1.0
CD C:PRO138 4.7 18.4 1.0
CA C:HIS145 4.7 18.7 1.0
N C:ASN96 4.8 15.7 1.0
CB C:MET62 4.8 18.0 1.0
N C:HIS95 4.9 14.7 1.0
C C:HIS95 4.9 15.0 1.0
C C:LEU94 5.0 17.1 1.0

Copper binding site 6 out of 6 in 1rzq

Go back to Copper Binding Sites List in 1rzq
Copper binding site 6 out of 6 in the Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes at PH5.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu502

b:19.3
occ:1.00
 NE2 C:HIS100 2.0 13.5 1.0
O C:HOH3004 2.0 11.6 1.0
NE2 C:HIS135 2.1 13.2 1.0
NE2 A:HIS306 2.1 14.1 1.0
CE1 C:HIS100 2.9 11.0 1.0
CD2 C:HIS135 3.0 11.3 1.0
CE1 A:HIS306 3.0 11.8 1.0
CD2 C:HIS100 3.1 11.7 1.0
CE1 C:HIS135 3.2 11.0 1.0
CD2 A:HIS306 3.2 11.1 1.0
OD2 C:ASP98 3.3 32.6 1.0
ND1 C:HIS100 4.0 13.4 1.0
CG C:HIS100 4.1 14.1 1.0
ND1 A:HIS306 4.2 13.1 1.0
CG C:HIS135 4.2 12.8 1.0
ND1 C:HIS135 4.2 14.6 1.0
NE2 A:HIS255 4.2 16.6 1.0
CG C:ASP98 4.3 28.0 1.0
CG A:HIS306 4.3 12.5 1.0
CE1 A:HIS255 4.5 16.8 1.0
CD2 A:HIS255 4.6 14.4 1.0
OD1 C:ASP98 4.8 26.7 1.0
ND1 A:HIS255 4.9 15.8 1.0
CD2 A:LEU308 5.0 15.5 1.0
CG A:HIS255 5.0 15.3 1.0

Reference:

H.T.Li, C.Wang, T.Chang, W.C.Chang, M.Y.Liu, J.Le Gall, L.L.Gui, J.P.Zhang, X.M.An, W.R.Chang. pH-Profile Crystal Structure Studies of C-Terminal Despentapeptide Nitrite Reductase From Achromobacter Cycloclastes Biochem.Biophys.Res.Commun. V. 316 107 2004.
ISSN: ISSN 0006-291X
PubMed: 15003518
DOI: 10.1016/J.BBRC.2004.01.177
Page generated: Tue Jul 30 22:43:07 2024

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