Atomistry » Copper » PDB 1oe2-1rjp » 1rjo
Atomistry »
  Copper »
    PDB 1oe2-1rjp »
      1rjo »

Copper in PDB 1rjo: Agao + Xe

Enzymatic activity of Agao + Xe

All present enzymatic activity of Agao + Xe:
1.4.3.6;

Protein crystallography data

The structure of Agao + Xe, PDB code: 1rjo was solved by J.M.Guss, D.M.Trambaiolo, A.P.Duff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.30 / 1.67
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 158.009, 63.189, 92.149, 90.00, 112.09, 90.00
R / Rfree (%) 15.7 / 17.8

Other elements in 1rjo:

The structure of Agao + Xe also contains other interesting chemical elements:

Xenon (Xe) 7 atoms
Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Agao + Xe (pdb code 1rjo). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Agao + Xe, PDB code: 1rjo:

Copper binding site 1 out of 1 in 1rjo

Go back to Copper Binding Sites List in 1rjo
Copper binding site 1 out of 1 in the Agao + Xe


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Agao + Xe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu701

b:23.7
occ:1.00
NE2 A:HIS433 2.0 15.6 1.0
ND1 A:HIS592 2.0 19.4 1.0
NE2 A:HIS431 2.1 14.4 1.0
O A:HOH1745 2.8 29.1 1.0
CD2 A:HIS431 3.0 13.8 1.0
CG A:HIS592 3.0 14.7 1.0
CD2 A:HIS433 3.0 16.6 1.0
CE1 A:HIS433 3.0 17.4 1.0
CE1 A:HIS592 3.0 16.6 1.0
CE1 A:HIS431 3.0 14.4 1.0
CB A:HIS592 3.3 13.9 1.0
O A:HOH1550 3.5 40.0 1.0
ND1 A:HIS433 4.1 15.0 1.0
ND1 A:HIS431 4.1 12.3 1.0
CG A:HIS431 4.1 12.9 1.0
NE2 A:HIS592 4.1 15.9 1.0
CD2 A:HIS592 4.2 15.7 1.0
CG A:HIS433 4.2 13.7 1.0
O A:HOH1208 4.5 23.1 1.0
CA A:HIS592 4.8 14.4 1.0
SD A:MET602 4.9 31.3 1.0
O A:HOH1551 4.9 37.2 1.0
O2 A:TPQ382 4.9 28.5 1.0

Reference:

A.P.Duff, D.M.Trambaiolo, A.E.Cohen, P.J.Ellis, G.A.Juda, E.M.Shepard, D.B.Langley, D.M.Dooley, H.C.Freeman, J.M.Guss. Using Xenon As A Probe For Dioxygen-Binding Sites in Copper Amine Oxidases J.Mol.Biol. V. 344 599 2004.
ISSN: ISSN 0022-2836
PubMed: 15533431
DOI: 10.1016/J.JMB.2004.09.075
Page generated: Sun Dec 13 11:01:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy