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Copper in PDB 1pnc: Accuracy and Precision in Protein Crystal Structure Analysis: Two Independent Refinements of the Structure of Poplar Plastocyanin at 173K

Protein crystallography data

The structure of Accuracy and Precision in Protein Crystal Structure Analysis: Two Independent Refinements of the Structure of Poplar Plastocyanin at 173K, PDB code: 1pnc was solved by B.A.Fields, J.M.Guss, H.C.Freeman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 29.180, 46.290, 56.640, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Copper Binding Sites:

The binding sites of Copper atom in the Accuracy and Precision in Protein Crystal Structure Analysis: Two Independent Refinements of the Structure of Poplar Plastocyanin at 173K (pdb code 1pnc). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Accuracy and Precision in Protein Crystal Structure Analysis: Two Independent Refinements of the Structure of Poplar Plastocyanin at 173K, PDB code: 1pnc:

Copper binding site 1 out of 1 in 1pnc

Go back to Copper Binding Sites List in 1pnc
Copper binding site 1 out of 1 in the Accuracy and Precision in Protein Crystal Structure Analysis: Two Independent Refinements of the Structure of Poplar Plastocyanin at 173K


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Accuracy and Precision in Protein Crystal Structure Analysis: Two Independent Refinements of the Structure of Poplar Plastocyanin at 173K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu100

b:4.6
occ:1.00
ND1 A:HIS87 2.0 6.5 1.0
ND1 A:HIS37 2.0 2.0 1.0
SG A:CYS84 2.1 3.0 1.0
SD A:MET92 2.8 3.9 1.0
CE1 A:HIS37 2.9 3.8 1.0
CE1 A:HIS87 2.9 7.9 1.0
HB2 A:HIS87 2.9 3.1 1.0
CG A:HIS87 3.0 4.3 1.0
CG A:HIS37 3.0 3.9 1.0
HE1 A:HIS37 3.0 2.4 1.0
HA A:HIS37 3.1 2.2 1.0
HE1 A:HIS87 3.1 5.7 1.0
HB3 A:CYS84 3.1 2.4 1.0
CB A:CYS84 3.2 4.0 1.0
HB3 A:HIS37 3.3 4.4 1.0
HB2 A:CYS84 3.3 2.3 1.0
HE2 A:MET92 3.4 6.9 1.0
HE3 A:MET92 3.4 7.1 1.0
CB A:HIS87 3.4 3.8 1.0
CB A:HIS37 3.5 4.2 1.0
HG2 A:PRO86 3.5 4.0 1.0
CE A:MET92 3.5 6.7 1.0
CA A:HIS37 3.7 4.5 1.0
H A:ASN38 3.9 2.0 1.0
HB3 A:HIS87 4.0 2.8 1.0
O A:PRO36 4.1 4.4 1.0
NE2 A:HIS37 4.1 3.2 1.0
NE2 A:HIS87 4.1 6.5 1.0
H A:HIS87 4.2 2.0 1.0
CD2 A:HIS37 4.2 2.8 1.0
CD2 A:HIS87 4.2 6.3 1.0
HB3 A:MET92 4.2 2.8 1.0
CG A:MET92 4.2 2.0 1.0
HG2 A:MET92 4.2 2.0 1.0
HD23 A:LEU12 4.2 11.1 1.0
HE1 A:MET92 4.4 6.0 1.0
HB2 A:HIS37 4.5 3.8 1.0
CG A:PRO86 4.5 2.6 1.0
CA A:CYS84 4.5 2.2 1.0
N A:HIS87 4.6 2.7 1.0
HD2 A:PRO86 4.6 2.8 1.0
N A:ASN38 4.7 2.0 1.0
CB A:MET92 4.7 2.2 1.0
CA A:HIS87 4.7 3.5 1.0
HB2 A:MET92 4.7 2.0 1.0
N A:HIS37 4.7 2.0 1.0
C A:PRO36 4.8 3.2 1.0
HB3 A:LEU12 4.8 6.1 1.0
HA A:CYS84 4.8 3.1 1.0
C A:HIS37 4.8 4.1 1.0
HG3 A:PRO86 4.8 2.9 1.0
HE2 A:HIS37 4.9 3.8 1.0
C A:CYS84 4.9 2.0 1.0
HE2 A:HIS87 4.9 7.4 1.0
HG3 A:MET92 5.0 2.1 1.0
O A:CYS84 5.0 2.0 1.0

Reference:

B.A.Fields, H.H.Bartsch, H.D.Bartunik, F.Cordes, J.M.Guss, H.C.Freeman. Accuracy and Precision in Protein Crystal Structure Analysis: Two Independent Refinements of the Structure of Poplar Plastocyanin at 173 K. Acta Crystallogr.,Sect.D V. 50 709 1994.
ISSN: ISSN 0907-4449
PubMed: 15299368
DOI: 10.1107/S0907444994003021
Page generated: Sun Dec 13 11:01:24 2020

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