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Copper in PDB 1pmy: Refined Crystal Structure of Pseudoazurin From Methylobacterium Extorquens AM1 at 1.5 Angstroms Resolution

Protein crystallography data

The structure of Refined Crystal Structure of Pseudoazurin From Methylobacterium Extorquens AM1 at 1.5 Angstroms Resolution, PDB code: 1pmy was solved by T.Inoue, Y.Kai, S.Harada, N.Kasai, Y.Ohshiro, S.Suzuki, T.Kohzuma, J.Tobari, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.619, 63.280, 35.133, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Copper Binding Sites:

The binding sites of Copper atom in the Refined Crystal Structure of Pseudoazurin From Methylobacterium Extorquens AM1 at 1.5 Angstroms Resolution (pdb code 1pmy). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Refined Crystal Structure of Pseudoazurin From Methylobacterium Extorquens AM1 at 1.5 Angstroms Resolution, PDB code: 1pmy:

Copper binding site 1 out of 1 in 1pmy

Go back to Copper Binding Sites List in 1pmy
Copper binding site 1 out of 1 in the Refined Crystal Structure of Pseudoazurin From Methylobacterium Extorquens AM1 at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Refined Crystal Structure of Pseudoazurin From Methylobacterium Extorquens AM1 at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu124

b:12.5
occ:1.00
ND1 A:HIS81 2.0 10.9 1.0
ND1 A:HIS40 2.1 11.2 1.0
SG A:CYS78 2.1 8.4 1.0
SD A:MET86 2.7 9.3 1.0
CG A:HIS40 2.9 11.4 1.0
CE1 A:HIS81 2.9 10.3 1.0
CG A:HIS81 3.1 9.7 1.0
CE1 A:HIS40 3.1 11.9 1.0
CB A:CYS78 3.2 7.4 1.0
CB A:HIS40 3.3 10.4 1.0
CE A:MET86 3.5 8.7 1.0
CB A:HIS81 3.5 9.4 1.0
CA A:HIS40 3.6 10.2 1.0
O A:GLY39 4.0 10.6 1.0
NE2 A:HIS81 4.0 11.2 1.0
CG A:MET86 4.1 9.6 1.0
CD2 A:HIS40 4.1 11.4 1.0
NE2 A:HIS40 4.1 12.3 1.0
CD2 A:HIS81 4.2 10.2 1.0
N A:HIS81 4.4 9.0 1.0
CB A:MET86 4.4 9.3 1.0
CA A:CYS78 4.5 7.7 1.0
N A:HIS40 4.5 9.6 1.0
CA A:HIS81 4.6 8.9 1.0
N A:ASN41 4.6 8.7 1.0
C A:GLY39 4.6 10.6 1.0
C A:HIS40 4.7 9.6 1.0
CG A:PRO80 4.7 8.8 1.0
SD A:MET16 4.9 15.2 1.0
C A:CYS78 5.0 7.4 1.0

Reference:

T.Inoue, Y.Kai, S.Harada, N.Kasai, Y.Ohshiro, S.Suzuki, T.Kohzuma, J.Tobari. Refined Crystal Structure of Pseudoazurin From Methylobacterium Extorquens AM1 at 1.5 A Resolution. Acta Crystallogr.,Sect.D V. 50 317 1994.
ISSN: ISSN 0907-4449
PubMed: 15299445
DOI: 10.1107/S0907444994000260
Page generated: Wed Oct 28 14:16:41 2020
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