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Copper in PDB 1plc: Accuracy and Precision in Protein Crystal Structure Analysis: Restrained Least-Squares Refinement of the Crystal Structure of Poplar Plastocyanin at 1.33 Angstroms Resolution

Protein crystallography data

The structure of Accuracy and Precision in Protein Crystal Structure Analysis: Restrained Least-Squares Refinement of the Crystal Structure of Poplar Plastocyanin at 1.33 Angstroms Resolution, PDB code: 1plc was solved by J.M.Guss, H.C.Freeman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.33
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 29.600, 46.860, 57.600, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Copper Binding Sites:

The binding sites of Copper atom in the Accuracy and Precision in Protein Crystal Structure Analysis: Restrained Least-Squares Refinement of the Crystal Structure of Poplar Plastocyanin at 1.33 Angstroms Resolution (pdb code 1plc). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Accuracy and Precision in Protein Crystal Structure Analysis: Restrained Least-Squares Refinement of the Crystal Structure of Poplar Plastocyanin at 1.33 Angstroms Resolution, PDB code: 1plc:

Copper binding site 1 out of 1 in 1plc

Go back to Copper Binding Sites List in 1plc
Copper binding site 1 out of 1 in the Accuracy and Precision in Protein Crystal Structure Analysis: Restrained Least-Squares Refinement of the Crystal Structure of Poplar Plastocyanin at 1.33 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Accuracy and Precision in Protein Crystal Structure Analysis: Restrained Least-Squares Refinement of the Crystal Structure of Poplar Plastocyanin at 1.33 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu100

b:8.8
occ:1.00
ND1 A:HIS37 1.9 7.6 1.0
ND1 A:HIS87 2.1 9.6 1.0
SG A:CYS84 2.1 7.0 1.0
SD A:MET92 2.8 7.5 1.0
CE1 A:HIS37 2.9 10.0 1.0
HB2 A:HIS87 3.0 3.6 1.0
CG A:HIS37 3.0 7.4 1.0
CE1 A:HIS87 3.0 13.5 1.0
HE1 A:HIS37 3.0 6.7 1.0
HE3 A:MET92 3.0 6.0 1.0
CG A:HIS87 3.1 10.6 1.0
HA A:HIS37 3.1 3.8 1.0
CB A:CYS84 3.2 9.0 1.0
HB3 A:CYS84 3.2 7.2 1.0
HE1 A:HIS87 3.2 11.3 1.0
HB2 A:CYS84 3.3 9.5 1.0
HB3 A:HIS37 3.3 2.0 1.0
CB A:HIS37 3.4 8.7 1.0
CB A:HIS87 3.4 6.5 1.0
CE A:MET92 3.5 8.0 1.0
HG2 A:PRO86 3.6 8.7 1.0
CA A:HIS37 3.7 7.1 1.0
O A:PRO36 3.9 9.7 1.0
H A:ASN38 3.9 8.3 1.0
HE1 A:MET92 3.9 4.0 1.0
HB3 A:HIS87 4.0 5.2 1.0
NE2 A:HIS37 4.0 9.9 1.0
HD21 A:LEU12 4.1 15.6 1.0
CD2 A:HIS37 4.1 8.9 1.0
H A:HIS87 4.1 10.2 1.0
CG A:MET92 4.1 7.6 1.0
NE2 A:HIS87 4.1 12.2 1.0
HG2 A:MET92 4.1 6.8 1.0
HB3 A:MET92 4.2 6.0 1.0
HE2 A:MET92 4.2 5.2 1.0
CD2 A:HIS87 4.2 10.7 1.0
HB2 A:HIS37 4.4 2.0 1.0
CA A:CYS84 4.5 4.2 1.0
CG A:PRO86 4.5 11.1 1.0
N A:HIS87 4.6 8.2 1.0
HD2 A:PRO86 4.6 4.2 1.0
CB A:MET92 4.6 6.7 1.0
N A:ASN38 4.6 5.7 1.0
N A:HIS37 4.6 9.1 1.0
C A:PRO36 4.7 9.1 1.0
CA A:HIS87 4.7 7.4 1.0
HB2 A:MET92 4.7 10.3 1.0
C A:HIS37 4.8 9.9 1.0
HA A:CYS84 4.8 4.0 1.0
HE2 A:HIS37 4.9 9.0 1.0
HG3 A:PRO86 4.9 8.8 1.0
C A:CYS84 4.9 4.6 1.0
HB3 A:LEU12 4.9 3.7 1.0
CD A:PRO86 4.9 6.4 1.0
HG3 A:MET92 4.9 6.0 1.0
HE2 A:HIS87 5.0 12.6 1.0

Reference:

J.M.Guss, H.D.Bartunik, H.C.Freeman. Accuracy and Precision in Protein Structure Analysis: Restrained Least-Squares Refinement of the Structure of Poplar Plastocyanin at 1.33 A Resolution. Acta Crystallogr.,Sect.B V. 48 790 1992.
ISSN: ISSN 0108-7681
PubMed: 1492962
DOI: 10.1107/S0108768192004270
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