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Copper in PDB 1oxy: Crystallographic Analysis of Oxygenated and Deoxygenated States of Arthropod Hemocyanin Shows Unusual Differences

Protein crystallography data

The structure of Crystallographic Analysis of Oxygenated and Deoxygenated States of Arthropod Hemocyanin Shows Unusual Differences, PDB code: 1oxy was solved by H.Ton-That, K.Magnus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.40
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 117.240, 117.240, 285.860, 90.00, 90.00, 120.00
R / Rfree (%) 17.1 / n/a

Copper Binding Sites:

The binding sites of Copper atom in the Crystallographic Analysis of Oxygenated and Deoxygenated States of Arthropod Hemocyanin Shows Unusual Differences (pdb code 1oxy). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystallographic Analysis of Oxygenated and Deoxygenated States of Arthropod Hemocyanin Shows Unusual Differences, PDB code: 1oxy:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1oxy

Go back to Copper Binding Sites List in 1oxy
Copper binding site 1 out of 2 in the Crystallographic Analysis of Oxygenated and Deoxygenated States of Arthropod Hemocyanin Shows Unusual Differences


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystallographic Analysis of Oxygenated and Deoxygenated States of Arthropod Hemocyanin Shows Unusual Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu629

b:20.0
occ:1.00
NE2 A:HIS324 1.9 12.3 1.0
O2 A:OXY631 2.1 24.8 1.0
NE2 A:HIS364 2.1 11.6 1.0
O1 A:OXY631 2.2 26.5 1.0
NE2 A:HIS328 2.4 21.5 1.0
CE1 A:HIS364 2.5 8.8 1.0
CE1 A:HIS324 2.7 10.7 1.0
CD2 A:HIS324 3.0 7.6 1.0
CD2 A:HIS328 3.2 16.6 1.0
CD2 A:HIS364 3.3 17.0 1.0
CE1 A:HIS328 3.5 16.9 1.0
CU A:CU630 3.6 22.6 1.0
ND1 A:HIS364 3.8 17.3 1.0
ND1 A:HIS324 3.8 13.1 1.0
CG A:HIS324 4.0 10.4 1.0
CD2 A:HIS204 4.0 11.0 1.0
NE2 A:HIS204 4.1 11.4 1.0
CE2 A:PHE360 4.1 14.4 1.0
CG A:HIS364 4.2 14.2 1.0
CE1 A:PHE49 4.3 10.0 1.0
CG A:HIS328 4.4 13.8 1.0
CZ A:PHE360 4.5 12.7 1.0
ND1 A:HIS328 4.5 19.1 1.0
CZ A:PHE49 4.7 15.1 1.0
CD2 A:PHE360 4.9 10.9 1.0
CE1 A:PHE200 4.9 17.6 1.0

Copper binding site 2 out of 2 in 1oxy

Go back to Copper Binding Sites List in 1oxy
Copper binding site 2 out of 2 in the Crystallographic Analysis of Oxygenated and Deoxygenated States of Arthropod Hemocyanin Shows Unusual Differences


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystallographic Analysis of Oxygenated and Deoxygenated States of Arthropod Hemocyanin Shows Unusual Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu630

b:22.6
occ:1.00
O2 A:OXY631 1.7 24.8 1.0
O1 A:OXY631 2.0 26.5 1.0
NE2 A:HIS177 2.1 12.3 1.0
NE2 A:HIS173 2.2 13.8 1.0
NE2 A:HIS204 2.4 11.4 1.0
CE1 A:HIS177 2.9 13.1 1.0
CD2 A:HIS177 3.1 9.8 1.0
CD2 A:HIS173 3.1 16.3 1.0
CE1 A:HIS173 3.2 16.3 1.0
CD2 A:HIS204 3.3 11.0 1.0
CE1 A:HIS204 3.4 14.6 1.0
CU A:CU629 3.6 20.0 1.0
ND1 A:HIS177 4.1 12.9 1.0
CG A:HIS177 4.2 15.1 1.0
ND1 A:HIS173 4.3 18.6 1.0
CG A:HIS173 4.3 17.1 1.0
CG A:HIS204 4.4 13.1 1.0
ND1 A:HIS204 4.5 15.0 1.0
CE2 A:PHE360 4.7 14.4 1.0
CG2 A:THR351 4.7 22.0 1.0
CZ A:PHE360 4.7 12.7 1.0
NE2 A:HIS324 4.8 12.3 1.0
CZ A:PHE49 4.8 15.1 1.0
NE2 A:HIS364 4.8 11.6 1.0
CE1 A:HIS324 4.8 10.7 1.0
CE1 A:PHE49 4.9 10.0 1.0

Reference:

K.A.Magnus, B.Hazes, H.Ton-That, C.Bonaventura, J.Bonaventura, W.G.Hol. Crystallographic Analysis of Oxygenated and Deoxygenated States of Arthropod Hemocyanin Shows Unusual Differences. Proteins V. 19 302 1994.
ISSN: ISSN 0887-3585
PubMed: 7984626
DOI: 10.1002/PROT.340190405
Page generated: Thu Sep 3 16:13:34 2020
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