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Copper in PDB 1ov8: Auracyanin B Structure in Space Group, P65

Protein crystallography data

The structure of Auracyanin B Structure in Space Group, P65, PDB code: 1ov8 was solved by M.Lee, M.J.Maher, H.C.Freeman, J.M.Guss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.13 / 1.90
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 115.885, 115.885, 108.149, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 21.9

Other elements in 1ov8:

The structure of Auracyanin B Structure in Space Group, P65 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Auracyanin B Structure in Space Group, P65 (pdb code 1ov8). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Auracyanin B Structure in Space Group, P65, PDB code: 1ov8:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 1ov8

Go back to Copper Binding Sites List in 1ov8
Copper binding site 1 out of 4 in the Auracyanin B Structure in Space Group, P65


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Auracyanin B Structure in Space Group, P65 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu150

b:24.4
occ:1.00
ND1 A:HIS57 1.8 3.7 1.0
SG A:CYS122 2.1 12.4 1.0
ND1 A:HIS127 2.2 4.2 1.0
CE1 A:HIS57 2.8 11.5 1.0
SD A:MET132 2.9 11.6 1.0
CG A:HIS57 2.9 10.8 1.0
CG A:HIS127 3.2 6.9 1.0
CE1 A:HIS127 3.2 9.1 1.0
CB A:CYS122 3.2 9.7 1.0
CB A:HIS57 3.4 8.5 1.0
CA A:HIS57 3.5 9.7 1.0
CB A:HIS127 3.5 7.9 1.0
O A:GLN56 3.5 11.5 1.0
CE A:MET132 3.6 5.2 1.0
NE2 A:HIS57 3.9 6.6 1.0
CD2 A:HIS57 4.0 8.9 1.0
CB A:PHE124 4.2 6.3 1.0
NE2 A:HIS127 4.3 4.7 1.0
CD2 A:HIS127 4.3 5.5 1.0
CG A:MET132 4.4 8.5 1.0
C A:GLN56 4.4 10.2 1.0
N A:HIS57 4.4 10.2 1.0
N A:ASN58 4.4 10.0 1.0
C A:HIS57 4.5 10.7 1.0
CA A:CYS122 4.6 10.6 1.0
CB A:MET132 4.8 8.2 1.0
N A:PHE124 4.9 7.7 1.0
CA A:HIS127 5.0 6.6 1.0

Copper binding site 2 out of 4 in 1ov8

Go back to Copper Binding Sites List in 1ov8
Copper binding site 2 out of 4 in the Auracyanin B Structure in Space Group, P65


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Auracyanin B Structure in Space Group, P65 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu151

b:24.5
occ:1.00
ND1 B:HIS57 1.8 7.5 1.0
ND1 B:HIS127 2.2 2.5 1.0
SG B:CYS122 2.2 10.6 1.0
CE1 B:HIS57 2.7 12.1 1.0
SD B:MET132 2.9 10.7 1.0
CG B:HIS57 2.9 9.3 1.0
CB B:CYS122 3.1 8.6 1.0
CE1 B:HIS127 3.1 7.1 1.0
CG B:HIS127 3.2 8.5 1.0
CB B:HIS57 3.4 9.0 1.0
CB B:HIS127 3.5 9.2 1.0
CE B:MET132 3.5 8.7 1.0
CA B:HIS57 3.5 9.7 1.0
O B:GLN56 3.6 10.7 1.0
NE2 B:HIS57 3.8 10.7 1.0
CD2 B:HIS57 4.0 8.9 1.0
CB B:PHE124 4.2 6.5 1.0
NE2 B:HIS127 4.2 4.8 1.0
CG B:MET132 4.3 10.3 1.0
CD2 B:HIS127 4.3 6.9 1.0
N B:ASN58 4.4 10.6 1.0
C B:GLN56 4.5 10.9 1.0
N B:HIS57 4.5 8.1 1.0
C B:HIS57 4.6 9.3 1.0
CA B:CYS122 4.6 9.1 1.0
CB B:MET132 4.8 10.2 1.0
N B:PHE124 5.0 8.9 1.0
CA B:HIS127 5.0 8.7 1.0

Copper binding site 3 out of 4 in 1ov8

Go back to Copper Binding Sites List in 1ov8
Copper binding site 3 out of 4 in the Auracyanin B Structure in Space Group, P65


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Auracyanin B Structure in Space Group, P65 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu152

b:25.1
occ:1.00
ND1 C:HIS57 1.9 4.8 1.0
SG C:CYS122 2.0 12.7 1.0
ND1 C:HIS127 2.2 4.1 1.0
CE1 C:HIS57 2.8 7.7 1.0
SD C:MET132 2.9 10.2 1.0
CG C:HIS57 3.0 10.5 1.0
CE1 C:HIS127 3.1 9.3 1.0
CB C:CYS122 3.1 8.4 1.0
CG C:HIS127 3.2 8.8 1.0
CB C:HIS57 3.4 9.4 1.0
CB C:HIS127 3.5 8.2 1.0
O C:GLN56 3.5 10.1 1.0
CA C:HIS57 3.5 9.4 1.0
CE C:MET132 3.5 4.0 1.0
NE2 C:HIS57 4.0 6.1 1.0
CD2 C:HIS57 4.1 8.5 1.0
CB C:PHE124 4.2 7.0 1.0
NE2 C:HIS127 4.3 5.9 1.0
CD2 C:HIS127 4.3 5.0 1.0
CG C:MET132 4.3 8.2 1.0
C C:GLN56 4.4 10.1 1.0
N C:ASN58 4.4 11.0 1.0
N C:HIS57 4.5 8.5 1.0
C C:HIS57 4.5 11.3 1.0
CA C:CYS122 4.6 9.3 1.0
CB C:MET132 4.8 9.1 1.0
N C:PHE124 4.9 8.2 1.0
CA C:HIS127 5.0 7.9 1.0

Copper binding site 4 out of 4 in 1ov8

Go back to Copper Binding Sites List in 1ov8
Copper binding site 4 out of 4 in the Auracyanin B Structure in Space Group, P65


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Auracyanin B Structure in Space Group, P65 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu153

b:24.6
occ:1.00
ND1 D:HIS57 1.8 10.0 1.0
SG D:CYS122 2.2 11.4 1.0
ND1 D:HIS127 2.2 2.1 1.0
CE1 D:HIS57 2.7 13.1 1.0
SD D:MET132 2.9 11.0 1.0
CG D:HIS57 3.0 8.7 1.0
CB D:CYS122 3.1 8.7 1.0
CE1 D:HIS127 3.2 9.1 1.0
CG D:HIS127 3.2 6.9 1.0
CB D:HIS57 3.5 9.2 1.0
CB D:HIS127 3.5 9.4 1.0
CA D:HIS57 3.5 9.1 1.0
CE D:MET132 3.5 3.1 1.0
O D:GLN56 3.6 11.4 1.0
NE2 D:HIS57 3.9 11.8 1.0
CD2 D:HIS57 4.0 8.1 1.0
CB D:PHE124 4.1 5.6 1.0
NE2 D:HIS127 4.3 4.9 1.0
CG D:MET132 4.3 9.0 1.0
CD2 D:HIS127 4.3 9.4 1.0
C D:GLN56 4.4 10.8 1.0
N D:ASN58 4.4 9.5 1.0
N D:HIS57 4.4 8.6 1.0
C D:HIS57 4.5 8.5 1.0
CA D:CYS122 4.6 8.2 1.0
CB D:MET132 4.8 9.1 1.0
N D:PHE124 4.9 7.1 1.0
CA D:HIS127 5.0 8.4 1.0

Reference:

M.Lee, M.J.Maher, H.C.Freeman, J.M.Guss. Auracyanin B Structure in Space Group P6(5). Acta Crystallogr.,Sect.D V. 59 1545 2003.
ISSN: ISSN 0907-4449
PubMed: 12925783
DOI: 10.1107/S0907444903014161
Page generated: Sun Dec 13 11:01:15 2020

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