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Copper in PDB 1nwo: Crystallographic Study of Azurin From Pseudomonas Putida

Protein crystallography data

The structure of Crystallographic Study of Azurin From Pseudomonas Putida, PDB code: 1nwo was solved by F.S.Mathews, Z.-W.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.92
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 43.250, 50.650, 54.600, 90.00, 107.79, 90.00
R / Rfree (%) 16.9 / 25.7

Copper Binding Sites:

The binding sites of Copper atom in the Crystallographic Study of Azurin From Pseudomonas Putida (pdb code 1nwo). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystallographic Study of Azurin From Pseudomonas Putida, PDB code: 1nwo:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1nwo

Go back to Copper Binding Sites List in 1nwo
Copper binding site 1 out of 2 in the Crystallographic Study of Azurin From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystallographic Study of Azurin From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu199

b:16.7
occ:1.00
ND1 A:HIS117 1.9 11.2 1.0
ND1 A:HIS46 2.0 12.3 1.0
SG A:CYS112 2.1 13.2 1.0
CE1 A:HIS117 2.9 9.8 1.0
CE1 A:HIS46 2.9 14.4 1.0
CG A:HIS117 3.0 11.1 1.0
SD A:MET121 3.0 13.5 1.0
CG A:HIS46 3.1 13.1 1.0
O A:GLY45 3.2 16.3 1.0
CB A:CYS112 3.3 6.5 1.0
CB A:HIS117 3.4 12.6 1.0
CA A:HIS46 3.5 11.2 1.0
CB A:HIS46 3.6 13.1 1.0
CE A:MET121 3.7 10.9 1.0
CB A:PHE114 3.9 11.8 1.0
NE2 A:HIS117 4.1 15.6 1.0
C A:GLY45 4.1 11.4 1.0
CD2 A:HIS117 4.1 8.9 1.0
NE2 A:HIS46 4.1 11.4 1.0
CD2 A:HIS46 4.2 14.2 1.0
N A:HIS46 4.3 12.4 1.0
CG A:MET121 4.5 16.5 1.0
N A:ASN47 4.7 9.1 1.0
C A:HIS46 4.7 11.1 1.0
CA A:CYS112 4.7 10.4 1.0
CG A:PHE114 4.7 15.9 1.0
CA A:HIS117 4.9 14.2 1.0
N A:PHE114 4.9 10.6 1.0
CB A:MET121 4.9 14.2 1.0
CA A:PHE114 5.0 11.0 1.0

Copper binding site 2 out of 2 in 1nwo

Go back to Copper Binding Sites List in 1nwo
Copper binding site 2 out of 2 in the Crystallographic Study of Azurin From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystallographic Study of Azurin From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu199

b:13.8
occ:1.00
ND1 B:HIS46 1.9 9.7 1.0
ND1 B:HIS117 2.0 9.8 1.0
SG B:CYS112 2.1 11.8 1.0
CE1 B:HIS46 2.8 9.1 1.0
CE1 B:HIS117 2.9 11.4 1.0
O B:GLY45 3.0 14.7 1.0
CG B:HIS117 3.0 9.9 1.0
CG B:HIS46 3.1 9.2 1.0
SD B:MET121 3.1 12.8 1.0
CB B:CYS112 3.3 5.1 1.0
CB B:HIS117 3.3 11.1 1.0
CA B:HIS46 3.5 10.6 1.0
CB B:HIS46 3.5 11.1 1.0
C B:GLY45 3.9 12.8 1.0
CB B:PHE114 3.9 10.7 1.0
CE B:MET121 3.9 8.4 1.0
NE2 B:HIS46 4.0 9.2 1.0
CD2 B:HIS117 4.1 12.9 1.0
NE2 B:HIS117 4.1 10.4 1.0
N B:HIS46 4.1 10.5 1.0
CD2 B:HIS46 4.1 10.6 1.0
CG B:MET121 4.6 13.2 1.0
C B:HIS46 4.6 8.9 1.0
N B:ASN47 4.7 8.1 1.0
CA B:CYS112 4.7 10.7 1.0
CG B:PHE114 4.7 9.8 1.0
CA B:HIS117 4.8 12.2 1.0
N B:PHE114 4.9 12.1 1.0
CA B:PHE114 5.0 10.2 1.0

Reference:

Z.W.Chen, M.J.Barber, W.S.Mcintire, F.S.Mathews. Crystallographic Study of Azurin From Pseudomonas Putida. Acta Crystallogr.,Sect.D V. 54 253 1998.
ISSN: ISSN 0907-4449
PubMed: 9761890
DOI: 10.1107/S0907444997011505
Page generated: Thu Sep 3 16:11:34 2020
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