Copper in the structure of Solution Structure of the Hoo-Bm Bound Blmt, Transposon TN5- Encoding Bleomycin-Binding Protein (pdb 1niq)

The binding sites of Copper atom in the structure of Solution Structure of the Hoo-Bm Bound Blmt, Transposon TN5- Encoding Bleomycin-Binding Protein (pdb code 1niq). This binding sites where shown with 5.0 Angstroms radius around Copper atom. The 1niq structure was solved by M.SUGIYAMA, with NMR in Solution technique. Copper Binding Sites: Copper binding site 1 out of 2 in 1niq Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 1niq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Leu113, B: Blm2402, conact list: Atom Atom Distance (A) Cu HD21 B:Leu113 4.99 Cu HD22 B:Leu113 3.52 Cu CD1 B:Leu113 4.92 Cu CD2 B:Leu113 4.29 Cu HD13 B:Leu113 4.28 Cu HD12 B:Leu113 4.69 Cu HD23 B:Leu113 4.01 Cu C1 B:Blm2402 4.25 Cu OH1 B:Blm2402 3.97 Cu C8 B:Blm2402 4.18 Cu H3X B:Blm2402 3.60 Cu O70 B:Blm2402 4.09 Cu C12 B:Blm2402 2.47 Cu NB B:Blm2402 2.92 Cu C28 B:Blm2402 4.77 Cu C30 B:Blm2402 3.33 Cu H6 B:Blm2402 2.72 Cu H5X B:Blm2402 4.28 Cu H14 B:Blm2402 4.38 Cu NC B:Blm2402 1.55 Cu H68 B:Blm2402 4.26 Cu O1 B:Blm2402 4.52 Cu NE B:Blm2402 3.66 Cu C31 B:Blm2402 4.79 Cu HNK B:Blm2402 2.74 Cu C5 B:Blm2402 3.96 Cu NG B:Blm2402 1.47 Cu H13 B:Blm2402 3.52 Cu H2 B:Blm2402 4.26 Cu C13 B:Blm2402 2.64 Cu C27 B:Blm2402 3.42 Cu HB2 B:Blm2402 3.87 Cu H29 B:Blm2402 4.34 Cu C7 B:Blm2402 2.41 Cu NK B:Blm2402 3.37 Cu C29 B:Blm2402 4.00 Cu H3E B:Blm2402 3.21 Cu C2 B:Blm2402 3.34 Cu NH B:Blm2402 1.53 Cu NJ B:Blm2402 2.74 Cu O30 B:Blm2402 4.43 Cu O12 B:Blm2402 3.66 Cu HO58 B:Blm2402 4.93 Cu C6 B:Blm2402 2.49 Cu H34 B:Blm2402 4.68 Cu C4 B:Blm2402 4.76 Cu C10 B:Blm2402 2.46 Cu H5E B:Blm2402 4.64 Cu C9 B:Blm2402 3.79 Cu C14 B:Blm2402 3.40 Cu HB1 B:Blm2402 2.60 Cu C3 B:Blm2402 2.75 interactive model: Copper binding site 2 out of 2 in 1niq Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 1niq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Leu113, B: Blm3402, conact list: Atom Atom Distance (A) Cu HD21 C:Leu113 4.98 Cu HD22 C:Leu113 3.51 Cu CD1 C:Leu113 4.90 Cu CD2 C:Leu113 4.28 Cu HD13 C:Leu113 4.27 Cu HD12 C:Leu113 4.65 Cu HD23 C:Leu113 3.99 Cu C1 B:Blm3402 4.25 Cu OH1 B:Blm3402 3.99 Cu C8 B:Blm3402 4.18 Cu H3X B:Blm3402 3.60 Cu O70 B:Blm3402 4.10 Cu C12 B:Blm3402 2.47 Cu NB B:Blm3402 2.92 Cu C28 B:Blm3402 4.77 Cu C30 B:Blm3402 3.34 Cu H6 B:Blm3402 2.71 Cu H5X B:Blm3402 4.27 Cu H14 B:Blm3402 4.38 Cu NC B:Blm3402 1.55 Cu H68 B:Blm3402 4.28 Cu O1 B:Blm3402 4.52 Cu NE B:Blm3402 3.66 Cu C31 B:Blm3402 4.80 Cu HNK B:Blm3402 2.75 Cu C5 B:Blm3402 3.95 Cu NG B:Blm3402 1.47 Cu H13 B:Blm3402 3.53 Cu H2 B:Blm3402 4.26 Cu C13 B:Blm3402 2.65 Cu C27 B:Blm3402 3.43 Cu HB2 B:Blm3402 3.88 Cu H29 B:Blm3402 4.33 Cu C7 B:Blm3402 2.40 Cu NK B:Blm3402 3.38 Cu C29 B:Blm3402 4.00 Cu H3E B:Blm3402 3.21 Cu C2 B:Blm3402 3.34 Cu NH B:Blm3402 1.53 Cu NJ B:Blm3402 2.74 Cu O30 B:Blm3402 4.44 Cu O12 B:Blm3402 3.67 Cu HO58 B:Blm3402 4.94 Cu C6 B:Blm3402 2.48 Cu H34 B:Blm3402 4.67 Cu C4 B:Blm3402 4.75 Cu C10 B:Blm3402 2.46 Cu H5E B:Blm3402 4.64 Cu C9 B:Blm3402 3.79 Cu C14 B:Blm3402 3.41 Cu HB1 B:Blm3402 2.61 Cu C3 B:Blm3402 2.75 interactive model: