Atomistry » Copper » PDB 1jxd-1mfm » 1lfi
Atomistry »
  Copper »
    PDB 1jxd-1mfm »
      1lfi »

Copper in PDB 1lfi: Metal Substitution in Transferrins: the Crystal Structure of Human Copper-Lactoferrin at 2.1 Angstroms Resolution

Protein crystallography data

The structure of Metal Substitution in Transferrins: the Crystal Structure of Human Copper-Lactoferrin at 2.1 Angstroms Resolution, PDB code: 1lfi was solved by C.A.Smith, B.F.Anderson, H.M.Baker, E.N.Baker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 155.900, 97.000, 56.000, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Copper Binding Sites:

The binding sites of Copper atom in the Metal Substitution in Transferrins: the Crystal Structure of Human Copper-Lactoferrin at 2.1 Angstroms Resolution (pdb code 1lfi). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Metal Substitution in Transferrins: the Crystal Structure of Human Copper-Lactoferrin at 2.1 Angstroms Resolution, PDB code: 1lfi:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1lfi

Go back to Copper Binding Sites List in 1lfi
Copper binding site 1 out of 2 in the Metal Substitution in Transferrins: the Crystal Structure of Human Copper-Lactoferrin at 2.1 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Metal Substitution in Transferrins: the Crystal Structure of Human Copper-Lactoferrin at 2.1 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu693

b:35.2
occ:1.00
O2 A:CO3695 1.9 31.1 1.0
OH A:TYR192 2.0 25.9 1.0
OD1 A:ASP60 2.0 34.1 1.0
NE2 A:HIS253 2.0 30.3 1.0
OH A:TYR92 2.8 28.0 1.0
CD2 A:HIS253 2.9 29.1 1.0
CE1 A:HIS253 3.0 30.6 1.0
CG A:ASP60 3.0 31.6 1.0
C A:CO3695 3.2 34.1 1.0
CZ A:TYR192 3.2 26.6 1.0
CB A:ASP60 3.5 29.0 1.0
NH2 A:ARG121 3.8 29.6 1.0
CZ A:TYR92 3.8 25.7 1.0
O1 A:CO3695 3.9 35.3 1.0
O3 A:CO3695 4.0 34.7 1.0
CE1 A:TYR192 4.0 26.5 1.0
CE2 A:TYR192 4.0 26.2 1.0
CG A:HIS253 4.1 29.8 1.0
NE A:ARG121 4.1 32.3 1.0
NH2 A:ARG210 4.1 21.0 1.0
ND1 A:HIS253 4.1 30.2 1.0
OD2 A:ASP60 4.1 34.2 1.0
CA A:ASP60 4.2 28.3 1.0
O A:HOH998 4.2 31.6 1.0
CZ A:ARG121 4.3 31.2 1.0
O A:HOH1219 4.5 39.5 1.0
CE1 A:TYR92 4.5 26.4 1.0
CE2 A:TYR92 4.7 24.4 1.0
OG1 A:THR122 4.9 28.5 1.0
CB A:THR122 4.9 28.8 1.0
N A:GLY61 4.9 28.2 1.0

Copper binding site 2 out of 2 in 1lfi

Go back to Copper Binding Sites List in 1lfi
Copper binding site 2 out of 2 in the Metal Substitution in Transferrins: the Crystal Structure of Human Copper-Lactoferrin at 2.1 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Metal Substitution in Transferrins: the Crystal Structure of Human Copper-Lactoferrin at 2.1 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu694

b:41.0
occ:1.00
OD1 A:ASP395 2.0 36.0 1.0
O2 A:CO3696 2.0 26.5 1.0
OH A:TYR435 2.0 30.1 1.0
NE2 A:HIS597 2.1 26.4 1.0
O1 A:CO3696 2.3 21.7 1.0
OH A:TYR528 2.3 29.1 1.0
C A:CO3696 2.5 24.7 1.0
CZ A:TYR435 3.0 29.9 1.0
CE1 A:HIS597 3.0 25.5 1.0
CD2 A:HIS597 3.1 26.4 1.0
CG A:ASP395 3.2 34.4 1.0
CZ A:TYR528 3.5 26.1 1.0
CE2 A:TYR435 3.5 29.6 1.0
O A:HOH997 3.7 29.5 1.0
NH2 A:ARG465 3.8 28.1 1.0
O3 A:CO3696 3.8 25.4 1.0
CB A:ASP395 3.9 30.5 1.0
CE1 A:TYR435 4.0 29.7 1.0
O A:HOH1122 4.0 30.7 1.0
ND1 A:HIS597 4.1 25.5 1.0
OD2 A:ASP395 4.2 36.0 1.0
CG A:HIS597 4.2 26.6 1.0
CE1 A:TYR528 4.2 23.7 1.0
CE2 A:TYR528 4.2 25.6 1.0
CA A:ASP395 4.6 28.9 1.0
CZ A:ARG465 4.6 28.5 1.0
NE A:ARG465 4.7 28.4 1.0
CD2 A:TYR435 4.7 29.6 1.0
N A:THR466 4.9 28.4 1.0
N A:ALA467 5.0 27.6 1.0

Reference:

C.A.Smith, B.F.Anderson, H.M.Baker, E.N.Baker. Metal Substitution in Transferrins: the Crystal Structure of Human Copper-Lactoferrin at 2.1-A Resolution. Biochemistry V. 31 4527 1992.
ISSN: ISSN 0006-2960
PubMed: 1581307
DOI: 10.1021/BI00133A020
Page generated: Sun Dec 13 11:00:16 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy