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Copper in PDB 1lcf: Crystal Structure of Copper-and Oxalate-Substituted Human Lactoferrin at 2.0 Angstroms Resolution

Protein crystallography data

The structure of Crystal Structure of Copper-and Oxalate-Substituted Human Lactoferrin at 2.0 Angstroms Resolution, PDB code: 1lcf was solved by C.A.Smith, B.F.Anderson, H.M.Baker, E.N.Baker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 155.800, 97.100, 56.200, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Copper-and Oxalate-Substituted Human Lactoferrin at 2.0 Angstroms Resolution (pdb code 1lcf). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Copper-and Oxalate-Substituted Human Lactoferrin at 2.0 Angstroms Resolution, PDB code: 1lcf:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1lcf

Go back to Copper Binding Sites List in 1lcf
Copper binding site 1 out of 2 in the Crystal Structure of Copper-and Oxalate-Substituted Human Lactoferrin at 2.0 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Copper-and Oxalate-Substituted Human Lactoferrin at 2.0 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu693

b:34.8
occ:1.00
OD1 A:ASP60 1.9 31.2 1.0
OH A:TYR192 2.0 30.3 1.0
NE2 A:HIS253 2.0 28.7 1.0
O2 A:CO3695 2.0 34.7 1.0
OH A:TYR92 2.6 24.3 1.0
O1 A:CO3695 2.6 30.6 1.0
CE1 A:HIS253 2.7 29.8 1.0
C A:CO3695 2.7 29.3 1.0
CG A:ASP60 3.0 27.5 1.0
CZ A:TYR192 3.1 23.7 1.0
CD2 A:HIS253 3.2 24.3 1.0
CZ A:TYR92 3.5 19.0 1.0
CB A:ASP60 3.7 25.9 1.0
CE1 A:TYR192 3.9 26.5 1.0
O3 A:CO3695 3.9 26.4 1.0
ND1 A:HIS253 3.9 25.8 1.0
CE2 A:TYR192 4.0 24.1 1.0
OD2 A:ASP60 4.0 26.5 1.0
NH2 A:ARG210 4.1 16.2 1.0
CE2 A:TYR92 4.1 16.1 1.0
O A:HOH992 4.1 27.0 1.0
NH2 A:ARG121 4.2 30.2 1.0
CG A:HIS253 4.2 23.6 1.0
CE1 A:TYR92 4.3 20.9 1.0
NE A:ARG121 4.3 33.4 1.0
CA A:ASP60 4.4 28.6 1.0
CZ A:ARG121 4.6 32.9 1.0
CB A:THR122 4.8 20.3 1.0
OG1 A:THR122 5.0 22.7 1.0

Copper binding site 2 out of 2 in 1lcf

Go back to Copper Binding Sites List in 1lcf
Copper binding site 2 out of 2 in the Crystal Structure of Copper-and Oxalate-Substituted Human Lactoferrin at 2.0 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Copper-and Oxalate-Substituted Human Lactoferrin at 2.0 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu694

b:28.9
occ:1.00
O2 A:OXL696 1.9 17.7 1.0
OH A:TYR435 2.0 28.1 1.0
O1 A:OXL696 2.0 19.3 1.0
NE2 A:HIS597 2.1 18.5 1.0
OD1 A:ASP395 2.1 37.0 1.0
OH A:TYR528 2.6 22.9 1.0
C1 A:OXL696 2.7 17.6 1.0
C2 A:OXL696 2.7 17.3 1.0
CE1 A:HIS597 2.8 17.1 1.0
CZ A:TYR435 3.0 25.7 1.0
CG A:ASP395 3.3 31.2 1.0
CD2 A:HIS597 3.3 17.1 1.0
CE2 A:TYR435 3.4 25.8 1.0
CZ A:TYR528 3.6 17.9 1.0
O A:HOH1076 3.9 23.5 1.0
CB A:ASP395 3.9 26.2 1.0
O3 A:OXL696 4.0 21.3 1.0
CE1 A:TYR435 4.0 22.3 1.0
ND1 A:HIS597 4.0 15.7 1.0
O4 A:OXL696 4.0 24.4 1.0
O A:HOH991 4.2 32.2 1.0
CG A:HIS597 4.3 13.6 1.0
CE1 A:TYR528 4.3 17.1 1.0
OD2 A:ASP395 4.3 28.5 1.0
CE2 A:TYR528 4.3 20.7 1.0
CA A:ASP395 4.4 25.1 1.0
O A:HOH1205 4.7 57.1 1.0
N A:THR466 4.7 23.3 1.0
N A:ALA467 4.7 23.9 1.0
CD2 A:TYR435 4.7 25.8 1.0
CB A:THR466 4.8 27.5 1.0
CB A:ARG465 4.8 28.6 1.0
OG1 A:THR466 4.9 27.6 1.0
O A:HOH1204 5.0 43.6 1.0

Reference:

C.A.Smith, B.F.Anderson, H.M.Baker, E.N.Baker. Structure of Copper- and Oxalate-Substituted Human Lactoferrin at 2.0 A Resolution. Acta Crystallogr.,Sect.D V. 50 302 1994.
ISSN: ISSN 0907-4449
PubMed: 15299444
DOI: 10.1107/S0907444994000491
Page generated: Wed Oct 28 14:15:36 2020
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