Atomistry » Copper » PDB 1jxd-1mfm » 1kya
Atomistry »
  Copper »
    PDB 1jxd-1mfm »
      1kya »

Copper in PDB 1kya: Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine

Enzymatic activity of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine

All present enzymatic activity of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine:
1.10.3.2;

Protein crystallography data

The structure of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine, PDB code: 1kya was solved by T.Bertrand, C.Jolivalt, P.Briozzo, E.Caminade, N.Joly, C.Madzak, C.Mougin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 87.720, 110.520, 123.201, 90.00, 103.44, 90.00
R / Rfree (%) 25.3 / 27.6

Copper Binding Sites:

The binding sites of Copper atom in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine (pdb code 1kya). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 16 binding sites of Copper where determined in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine, PDB code: 1kya:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10; 11; 12; 13; 14; 15; 16;

Copper binding site 1 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 1 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu500

b:47.3
occ:1.00
SG A:CYS453 2.2 41.0 1.0
ND1 A:HIS458 2.2 45.9 1.0
ND1 A:HIS395 2.4 38.6 1.0
CE1 A:HIS458 3.1 46.3 1.0
CG A:HIS458 3.2 44.0 1.0
CG A:HIS395 3.2 37.2 1.0
CB A:CYS453 3.3 36.7 1.0
CE1 A:HIS395 3.3 38.4 1.0
CB A:HIS395 3.4 36.1 1.0
CD1 A:ILE455 3.5 35.0 1.0
CB A:HIS458 3.6 41.3 1.0
CD2 A:PHE463 3.7 38.2 1.0
CB A:ILE455 3.8 36.0 1.0
CE2 A:PHE463 3.8 37.7 1.0
CG1 A:ILE455 3.9 37.4 1.0
CA A:HIS395 3.9 35.5 1.0
NE2 A:HIS458 4.3 46.9 1.0
CD2 A:HIS458 4.3 45.8 1.0
CD2 A:HIS395 4.4 37.9 1.0
NE2 A:HIS395 4.4 40.2 1.0
CD A:PRO396 4.5 34.0 1.0
CG2 A:ILE455 4.6 34.8 1.0
CA A:CYS453 4.7 36.2 1.0
N A:ILE455 4.8 35.9 1.0
C A:HIS395 4.8 35.2 1.0
CA A:ILE455 4.9 36.2 1.0
O A:GLY392 4.9 42.1 1.0
N A:HIS395 5.0 35.6 1.0
N A:PRO396 5.0 34.8 1.0
O A:ILE455 5.0 35.5 1.0
CG A:PHE463 5.0 37.1 1.0

Copper binding site 2 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 2 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:43.8
occ:1.00
O A:HOH1505 1.8 38.1 1.0
NE2 A:HIS400 2.1 30.7 1.0
NE2 A:HIS452 2.2 36.0 1.0
NE2 A:HIS111 2.3 31.4 1.0
CE1 A:HIS400 2.9 28.9 1.0
CE1 A:HIS452 3.0 35.6 1.0
CD2 A:HIS111 3.2 31.6 1.0
CD2 A:HIS400 3.2 30.7 1.0
CE1 A:HIS111 3.3 31.3 1.0
CD2 A:HIS452 3.4 36.2 1.0
CD2 A:HIS398 3.6 37.7 1.0
CU A:CU502 3.8 48.3 1.0
CU A:CU503 4.0 76.1 1.0
ND1 A:HIS400 4.1 31.2 1.0
ND1 A:HIS452 4.2 35.6 1.0
NE2 A:HIS398 4.2 39.6 1.0
CG A:HIS400 4.3 32.0 1.0
CG A:HIS111 4.4 31.1 1.0
ND1 A:HIS111 4.4 31.4 1.0
CG A:HIS452 4.4 35.4 1.0
CD2 A:HIS64 4.4 37.5 1.0
NE2 A:HIS64 4.7 39.3 1.0
CG A:HIS398 4.7 38.2 1.0
NE2 A:HIS454 4.8 32.8 1.0
CD2 A:HIS454 4.8 32.3 1.0
CD2 A:PHE450 4.8 33.5 1.0
CG A:HIS64 4.9 37.1 1.0
CB A:PHE450 5.0 34.9 1.0

Copper binding site 3 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 3 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:48.3
occ:1.00
O A:HOH1505 2.1 38.1 1.0
NE2 A:HIS454 2.3 32.8 1.0
ND1 A:HIS66 2.3 35.2 1.0
NE2 A:HIS109 2.5 30.1 1.0
CE1 A:HIS66 2.9 34.6 1.0
CD2 A:HIS454 3.1 32.3 1.0
CE1 A:HIS109 3.3 29.6 1.0
CE1 A:HIS454 3.4 31.8 1.0
CG A:HIS66 3.4 33.6 1.0
CD2 A:HIS109 3.7 28.9 1.0
CD2 A:HIS64 3.7 37.5 1.0
CU A:CU503 3.8 76.1 1.0
CU A:CU501 3.8 43.8 1.0
CD2 A:HIS398 4.0 37.7 1.0
CB A:HIS66 4.0 32.8 1.0
NE2 A:HIS66 4.1 34.2 1.0
NE2 A:HIS398 4.1 39.6 1.0
CZ2 A:TRP107 4.2 30.6 1.0
NE2 A:HIS64 4.3 39.3 1.0
CG A:HIS454 4.3 33.0 1.0
CD2 A:HIS66 4.4 33.9 1.0
ND1 A:HIS454 4.4 32.1 1.0
ND1 A:HIS109 4.5 31.0 1.0
CB A:ALA241 4.6 28.9 1.0
CE2 A:TRP107 4.6 29.7 1.0
CG A:HIS109 4.7 30.0 1.0
CH2 A:TRP107 4.8 28.9 1.0
CG A:HIS64 4.8 37.1 1.0
NE1 A:TRP107 4.8 28.0 1.0
CA A:HIS66 4.9 32.2 1.0
CD2 A:HIS111 4.9 31.6 1.0
CG A:HIS398 4.9 38.2 1.0
NE2 A:HIS111 4.9 31.4 1.0

Copper binding site 4 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 4 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu503

b:76.1
occ:1.00
NE2 A:HIS398 2.0 39.6 1.0
NE2 A:HIS64 2.1 39.3 1.0
O A:HOH1540 2.6 36.9 1.0
CD2 A:HIS398 2.9 37.7 1.0
CE1 A:HIS64 3.0 37.1 1.0
CE1 A:HIS398 3.0 38.7 1.0
CD2 A:HIS64 3.0 37.5 1.0
CE1 A:HIS400 3.3 28.9 1.0
O A:HOH1505 3.4 38.1 1.0
NE2 A:HIS400 3.5 30.7 1.0
ND1 A:HIS400 3.5 31.2 1.0
ND1 A:HIS66 3.7 35.2 1.0
CG A:HIS66 3.8 33.6 1.0
CU A:CU502 3.8 48.3 1.0
CD2 A:HIS400 3.8 30.7 1.0
CG A:HIS400 3.8 32.0 1.0
CE1 A:HIS66 3.9 34.6 1.0
CA A:HIS66 4.0 32.2 1.0
CU A:CU501 4.0 43.8 1.0
CD2 A:HIS66 4.0 33.9 1.0
ND1 A:HIS64 4.0 37.9 1.0
CG A:HIS64 4.1 37.1 1.0
ND1 A:HIS398 4.1 38.7 1.0
CG A:HIS398 4.1 38.2 1.0
NE2 A:HIS66 4.1 34.2 1.0
N A:GLY67 4.2 32.9 1.0
CB A:HIS66 4.3 32.8 1.0
C A:HIS66 4.6 32.6 1.0
CA A:HIS400 4.7 34.0 1.0
CB A:HIS400 4.8 32.9 1.0
N A:HIS66 4.8 32.2 1.0
O A:LEU399 4.9 35.5 1.0

Copper binding site 5 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 5 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu500

b:48.8
occ:1.00
ND1 B:HIS458 2.2 45.0 1.0
SG B:CYS453 2.2 41.0 1.0
ND1 B:HIS395 2.4 38.4 1.0
CE1 B:HIS458 3.1 45.2 1.0
CG B:HIS458 3.2 43.6 1.0
CG B:HIS395 3.3 38.1 1.0
CE1 B:HIS395 3.3 37.6 1.0
CB B:CYS453 3.3 36.2 1.0
CB B:HIS458 3.5 41.6 1.0
CB B:HIS395 3.5 36.5 1.0
CD1 B:ILE455 3.6 34.3 1.0
CD2 B:PHE463 3.7 37.6 1.0
CB B:ILE455 3.8 36.1 1.0
CE2 B:PHE463 3.8 37.4 1.0
CG1 B:ILE455 3.9 35.8 1.0
CA B:HIS395 4.0 35.9 1.0
NE2 B:HIS458 4.2 45.4 1.0
CD2 B:HIS458 4.3 44.7 1.0
NE2 B:HIS395 4.4 39.9 1.0
CD2 B:HIS395 4.4 37.7 1.0
CG2 B:ILE455 4.5 36.4 1.0
CD B:PRO396 4.6 34.9 1.0
CA B:CYS453 4.7 36.1 1.0
N B:ILE455 4.8 36.1 1.0
CA B:ILE455 4.8 36.7 1.0
O B:ILE455 4.9 36.2 1.0
C B:HIS395 4.9 36.0 1.0
CG B:PHE463 5.0 38.0 1.0
CA B:HIS458 5.0 39.9 1.0

Copper binding site 6 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 6 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu501

b:46.2
occ:1.00
O B:HOH1502 1.9 45.9 1.0
NE2 B:HIS400 2.2 31.2 1.0
NE2 B:HIS452 2.2 34.8 1.0
NE2 B:HIS111 2.3 30.4 1.0
CE1 B:HIS452 2.9 35.5 1.0
CE1 B:HIS400 3.0 29.0 1.0
CD2 B:HIS111 3.2 30.3 1.0
CD2 B:HIS400 3.3 30.1 1.0
CE1 B:HIS111 3.4 30.9 1.0
CD2 B:HIS452 3.4 35.5 1.0
CD2 B:HIS398 3.5 38.4 1.0
CU B:CU503 3.9 74.7 1.0
CU B:CU502 4.0 50.4 1.0
ND1 B:HIS452 4.1 36.6 1.0
ND1 B:HIS400 4.2 30.3 1.0
NE2 B:HIS398 4.2 41.3 1.0
CG B:HIS400 4.3 31.7 1.0
CG B:HIS111 4.4 30.9 1.0
CD2 B:HIS64 4.4 37.9 1.0
ND1 B:HIS111 4.4 31.7 1.0
CG B:HIS452 4.4 35.5 1.0
NE2 B:HIS64 4.6 39.7 1.0
CG B:HIS398 4.7 38.2 1.0
NE2 B:HIS454 4.7 30.7 1.0
CD2 B:HIS454 4.7 31.3 1.0
CD2 B:PHE450 4.9 33.8 1.0
CG B:HIS64 4.9 36.9 1.0
CE1 B:HIS109 5.0 29.3 1.0

Copper binding site 7 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 7 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu502

b:50.4
occ:1.00
O B:HOH1502 2.1 45.9 1.0
ND1 B:HIS66 2.2 33.9 1.0
NE2 B:HIS454 2.2 30.7 1.0
NE2 B:HIS109 2.4 30.3 1.0
CE1 B:HIS66 2.9 34.9 1.0
CD2 B:HIS454 3.1 31.3 1.0
CE1 B:HIS454 3.2 31.0 1.0
CE1 B:HIS109 3.3 29.3 1.0
CG B:HIS66 3.3 32.8 1.0
CD2 B:HIS109 3.5 30.1 1.0
CD2 B:HIS64 3.8 37.9 1.0
CU B:CU503 3.9 74.7 1.0
CB B:HIS66 3.9 33.2 1.0
CZ2 B:TRP107 3.9 30.5 1.0
CU B:CU501 4.0 46.2 1.0
NE2 B:HIS66 4.1 34.9 1.0
CD2 B:HIS398 4.2 38.4 1.0
CG B:HIS454 4.3 32.8 1.0
CD2 B:HIS66 4.3 34.5 1.0
NE2 B:HIS398 4.3 41.3 1.0
ND1 B:HIS454 4.3 31.9 1.0
CE2 B:TRP107 4.4 28.9 1.0
NE2 B:HIS64 4.4 39.7 1.0
CB B:ALA241 4.4 28.9 1.0
ND1 B:HIS109 4.5 29.9 1.0
CH2 B:TRP107 4.5 29.0 1.0
NE1 B:TRP107 4.6 27.2 1.0
CG B:HIS109 4.6 29.5 1.0
CA B:HIS66 4.8 33.0 1.0
CG B:HIS64 5.0 36.9 1.0

Copper binding site 8 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 8 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu503

b:74.7
occ:1.00
NE2 B:HIS398 2.0 41.3 1.0
NE2 B:HIS64 2.0 39.7 1.0
O B:HOH1304 2.3 68.8 1.0
CD2 B:HIS64 2.9 37.9 1.0
CD2 B:HIS398 2.9 38.4 1.0
CE1 B:HIS64 3.0 38.0 1.0
CE1 B:HIS398 3.1 39.7 1.0
CE1 B:HIS400 3.2 29.0 1.0
ND1 B:HIS400 3.5 30.3 1.0
NE2 B:HIS400 3.5 31.2 1.0
O B:HOH1502 3.5 45.9 1.0
ND1 B:HIS66 3.7 33.9 1.0
CG B:HIS66 3.8 32.8 1.0
CD2 B:HIS400 3.8 30.1 1.0
CE1 B:HIS66 3.9 34.9 1.0
CG B:HIS400 3.9 31.7 1.0
CU B:CU502 3.9 50.4 1.0
CU B:CU501 3.9 46.2 1.0
CA B:HIS66 3.9 33.0 1.0
ND1 B:HIS64 4.0 38.0 1.0
CG B:HIS64 4.0 36.9 1.0
CD2 B:HIS66 4.0 34.5 1.0
NE2 B:HIS66 4.1 34.9 1.0
CG B:HIS398 4.1 38.2 1.0
ND1 B:HIS398 4.1 39.7 1.0
CB B:HIS66 4.3 33.2 1.0
N B:GLY67 4.3 32.2 1.0
C B:HIS66 4.7 32.5 1.0
CA B:HIS400 4.8 34.0 1.0
N B:HIS66 4.8 32.5 1.0
CB B:HIS400 4.8 33.7 1.0
O B:LEU399 5.0 34.8 1.0

Copper binding site 9 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 9 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu500

b:45.9
occ:1.00
ND1 C:HIS458 2.1 44.5 1.0
SG C:CYS453 2.3 39.6 1.0
ND1 C:HIS395 2.4 38.8 1.0
CE1 C:HIS458 3.1 44.7 1.0
CG C:HIS458 3.1 43.5 1.0
CG C:HIS395 3.3 37.9 1.0
CE1 C:HIS395 3.3 38.3 1.0
CB C:CYS453 3.4 36.1 1.0
CB C:HIS458 3.5 41.1 1.0
CB C:HIS395 3.5 36.7 1.0
CD1 C:ILE455 3.6 34.6 1.0
CD2 C:PHE463 3.7 38.1 1.0
CB C:ILE455 3.8 36.0 1.0
CE2 C:PHE463 3.8 37.8 1.0
CG1 C:ILE455 3.9 36.2 1.0
CA C:HIS395 4.0 35.4 1.0
NE2 C:HIS458 4.2 46.0 1.0
CD2 C:HIS458 4.2 44.7 1.0
NE2 C:HIS395 4.4 40.3 1.0
CD2 C:HIS395 4.4 38.7 1.0
CG2 C:ILE455 4.6 35.0 1.0
CD C:PRO396 4.6 34.7 1.0
CA C:CYS453 4.8 35.8 1.0
O C:GLY392 4.8 42.5 1.0
N C:ILE455 4.8 35.8 1.0
CA C:ILE455 4.9 35.8 1.0
C C:HIS395 5.0 35.2 1.0
O C:ILE455 5.0 36.0 1.0
CG C:PHE463 5.0 37.1 1.0
CA C:HIS458 5.0 40.2 1.0

Copper binding site 10 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 10 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu501

b:43.8
occ:1.00
O C:HOH1492 1.9 35.0 1.0
NE2 C:HIS452 2.2 34.9 1.0
NE2 C:HIS400 2.2 30.9 1.0
NE2 C:HIS111 2.3 30.4 1.0
CE1 C:HIS452 2.9 34.7 1.0
CE1 C:HIS400 3.0 28.7 1.0
CD2 C:HIS111 3.2 32.0 1.0
CD2 C:HIS400 3.3 30.2 1.0
CE1 C:HIS111 3.3 30.6 1.0
CD2 C:HIS452 3.4 35.5 1.0
CD2 C:HIS398 3.5 38.6 1.0
CU C:CU502 3.9 47.6 1.0
CU C:CU503 3.9 72.5 1.0
ND1 C:HIS452 4.1 34.4 1.0
ND1 C:HIS400 4.2 30.6 1.0
NE2 C:HIS398 4.2 41.5 1.0
CG C:HIS400 4.4 31.4 1.0
CG C:HIS111 4.4 32.2 1.0
CG C:HIS452 4.4 35.5 1.0
ND1 C:HIS111 4.4 31.2 1.0
CD2 C:HIS64 4.4 38.2 1.0
NE2 C:HIS454 4.7 31.1 1.0
CG C:HIS398 4.7 38.9 1.0
CD2 C:HIS454 4.7 31.8 1.0
NE2 C:HIS64 4.7 39.3 1.0
CD2 C:PHE450 4.9 33.8 1.0
CG C:HIS64 5.0 37.0 1.0

Copper binding site 11 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 11 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 11 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu502

b:47.6
occ:1.00
O C:HOH1492 2.1 35.0 1.0
ND1 C:HIS66 2.3 35.4 1.0
NE2 C:HIS454 2.3 31.1 1.0
NE2 C:HIS109 2.4 30.9 1.0
CE1 C:HIS66 3.0 35.7 1.0
CD2 C:HIS454 3.2 31.8 1.0
CE1 C:HIS109 3.2 30.2 1.0
CG C:HIS66 3.4 34.4 1.0
CE1 C:HIS454 3.4 31.0 1.0
CD2 C:HIS109 3.5 29.7 1.0
CD2 C:HIS64 3.7 38.2 1.0
CU C:CU503 3.8 72.5 1.0
CB C:HIS66 3.8 32.9 1.0
CU C:CU501 3.9 43.8 1.0
CZ2 C:TRP107 4.0 30.4 1.0
CD2 C:HIS398 4.1 38.6 1.0
NE2 C:HIS66 4.1 34.9 1.0
NE2 C:HIS398 4.3 41.5 1.0
NE2 C:HIS64 4.3 39.3 1.0
CD2 C:HIS66 4.4 35.3 1.0
CG C:HIS454 4.4 33.0 1.0
ND1 C:HIS109 4.4 31.1 1.0
ND1 C:HIS454 4.4 32.3 1.0
CE2 C:TRP107 4.5 30.1 1.0
CG C:HIS109 4.6 30.2 1.0
CH2 C:TRP107 4.6 27.6 1.0
CB C:ALA241 4.6 28.3 1.0
NE1 C:TRP107 4.7 28.5 1.0
CA C:HIS66 4.7 32.4 1.0
CG C:HIS64 4.8 37.0 1.0
CD2 C:HIS111 4.9 32.0 1.0

Copper binding site 12 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 12 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 12 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu503

b:72.5
occ:1.00
NE2 C:HIS398 2.0 41.5 1.0
NE2 C:HIS64 2.0 39.3 1.0
O C:HOH1748 2.3 73.8 1.0
CD2 C:HIS64 2.9 38.2 1.0
CD2 C:HIS398 3.0 38.6 1.0
CE1 C:HIS64 3.0 36.9 1.0
CE1 C:HIS398 3.1 40.0 1.0
CE1 C:HIS400 3.2 28.7 1.0
NE2 C:HIS400 3.4 30.9 1.0
ND1 C:HIS400 3.4 30.6 1.0
O C:HOH1492 3.5 35.0 1.0
ND1 C:HIS66 3.8 35.4 1.0
CD2 C:HIS400 3.8 30.2 1.0
CG C:HIS400 3.8 31.4 1.0
CU C:CU502 3.8 47.6 1.0
CG C:HIS66 3.9 34.4 1.0
CU C:CU501 3.9 43.8 1.0
CE1 C:HIS66 4.0 35.7 1.0
ND1 C:HIS64 4.0 37.6 1.0
CA C:HIS66 4.0 32.4 1.0
CG C:HIS64 4.0 37.0 1.0
CD2 C:HIS66 4.1 35.3 1.0
CG C:HIS398 4.1 38.9 1.0
ND1 C:HIS398 4.1 40.1 1.0
NE2 C:HIS66 4.2 34.9 1.0
N C:GLY67 4.3 33.7 1.0
CB C:HIS66 4.3 32.9 1.0
C C:HIS66 4.7 32.6 1.0
CA C:HIS400 4.7 33.8 1.0
CB C:HIS400 4.8 32.4 1.0
N C:HIS66 4.8 32.8 1.0
O C:LEU399 4.9 34.9 1.0

Copper binding site 13 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 13 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 13 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu500

b:47.6
occ:1.00
ND1 D:HIS458 2.2 45.2 1.0
SG D:CYS453 2.2 39.1 1.0
ND1 D:HIS395 2.3 38.7 1.0
CE1 D:HIS458 3.1 45.8 1.0
CG D:HIS395 3.2 37.4 1.0
CG D:HIS458 3.2 43.1 1.0
CE1 D:HIS395 3.3 38.7 1.0
CB D:CYS453 3.4 36.8 1.0
CD1 D:ILE455 3.4 34.6 1.0
CB D:HIS395 3.4 35.7 1.0
CB D:HIS458 3.5 41.2 1.0
CD2 D:PHE463 3.7 37.4 1.0
CB D:ILE455 3.8 36.4 1.0
CE2 D:PHE463 3.8 37.9 1.0
CG1 D:ILE455 3.9 36.0 1.0
CA D:HIS395 3.9 35.8 1.0
NE2 D:HIS458 4.3 45.7 1.0
CD2 D:HIS458 4.3 44.8 1.0
CD2 D:HIS395 4.4 38.5 1.0
NE2 D:HIS395 4.4 39.6 1.0
CD D:PRO396 4.5 34.7 1.0
CG2 D:ILE455 4.6 36.1 1.0
CA D:CYS453 4.7 35.5 1.0
N D:ILE455 4.8 36.4 1.0
O D:GLY392 4.8 42.0 1.0
C D:HIS395 4.8 35.3 1.0
CA D:ILE455 4.9 36.7 1.0
O D:ILE455 4.9 34.8 1.0
N D:HIS395 5.0 35.0 1.0
CG D:PHE463 5.0 37.9 1.0

Copper binding site 14 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 14 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 14 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu501

b:44.5
occ:1.00
O D:HOH1503 2.0 39.6 1.0
NE2 D:HIS400 2.2 30.2 1.0
NE2 D:HIS452 2.2 34.6 1.0
NE2 D:HIS111 2.3 29.6 1.0
CE1 D:HIS452 2.9 34.6 1.0
CE1 D:HIS400 3.0 28.0 1.0
CD2 D:HIS111 3.2 30.5 1.0
CD2 D:HIS400 3.3 29.9 1.0
CE1 D:HIS111 3.4 30.4 1.0
CD2 D:HIS452 3.4 34.7 1.0
CD2 D:HIS398 3.5 38.0 1.0
CU D:CU502 3.9 47.7 1.0
CU D:CU503 3.9 75.2 1.0
ND1 D:HIS452 4.1 34.6 1.0
ND1 D:HIS400 4.1 29.3 1.0
NE2 D:HIS398 4.1 40.0 1.0
CG D:HIS400 4.3 31.1 1.0
CG D:HIS452 4.4 34.9 1.0
CG D:HIS111 4.4 31.2 1.0
CD2 D:HIS64 4.4 36.6 1.0
ND1 D:HIS111 4.5 30.1 1.0
CG D:HIS398 4.6 38.4 1.0
NE2 D:HIS64 4.7 38.3 1.0
NE2 D:HIS454 4.7 31.1 1.0
CD2 D:HIS454 4.7 30.9 1.0
CD2 D:PHE450 4.9 34.0 1.0
CG D:HIS64 4.9 36.1 1.0

Copper binding site 15 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 15 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 15 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu502

b:47.7
occ:1.00
O D:HOH1503 2.0 39.6 1.0
ND1 D:HIS66 2.1 35.2 1.0
NE2 D:HIS454 2.3 31.1 1.0
NE2 D:HIS109 2.5 29.5 1.0
CE1 D:HIS66 2.8 36.2 1.0
CD2 D:HIS454 3.1 30.9 1.0
CG D:HIS66 3.3 34.1 1.0
CE1 D:HIS109 3.3 29.2 1.0
CE1 D:HIS454 3.3 30.5 1.0
CD2 D:HIS109 3.6 28.6 1.0
CU D:CU503 3.7 75.2 1.0
CD2 D:HIS64 3.7 36.6 1.0
CB D:HIS66 3.9 33.0 1.0
CU D:CU501 3.9 44.5 1.0
NE2 D:HIS66 4.0 35.3 1.0
CD2 D:HIS398 4.0 38.0 1.0
CZ2 D:TRP107 4.1 29.1 1.0
NE2 D:HIS398 4.2 40.0 1.0
CD2 D:HIS66 4.3 35.5 1.0
NE2 D:HIS64 4.3 38.3 1.0
CG D:HIS454 4.3 32.7 1.0
ND1 D:HIS454 4.4 32.0 1.0
CE2 D:TRP107 4.5 28.7 1.0
ND1 D:HIS109 4.5 30.5 1.0
CB D:ALA241 4.5 27.5 1.0
NE1 D:TRP107 4.7 27.7 1.0
CG D:HIS109 4.7 30.0 1.0
CH2 D:TRP107 4.7 28.4 1.0
CA D:HIS66 4.7 32.5 1.0
CG D:HIS64 4.9 36.1 1.0
CG D:HIS398 4.9 38.4 1.0
CD2 D:HIS111 5.0 30.5 1.0

Copper binding site 16 out of 16 in 1kya

Go back to Copper Binding Sites List in 1kya
Copper binding site 16 out of 16 in the Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 16 of Active Laccase From Trametes Versicolor Complexed with 2,5-Xylidine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu503

b:75.2
occ:1.00
NE2 D:HIS398 2.0 40.0 1.0
NE2 D:HIS64 2.0 38.3 1.0
O D:HOH1747 2.9 77.8 1.0
CD2 D:HIS64 2.9 36.6 1.0
CE1 D:HIS64 3.0 36.9 1.0
CD2 D:HIS398 3.0 38.0 1.0
CE1 D:HIS398 3.0 39.7 1.0
O D:HOH1503 3.2 39.6 1.0
CE1 D:HIS400 3.3 28.0 1.0
NE2 D:HIS400 3.5 30.2 1.0
ND1 D:HIS400 3.6 29.3 1.0
ND1 D:HIS66 3.6 35.2 1.0
CG D:HIS66 3.7 34.1 1.0
CU D:CU502 3.7 47.7 1.0
CE1 D:HIS66 3.8 36.2 1.0
CA D:HIS66 3.8 32.5 1.0
CD2 D:HIS400 3.9 29.9 1.0
CG D:HIS400 3.9 31.1 1.0
CU D:CU501 3.9 44.5 1.0
CD2 D:HIS66 4.0 35.5 1.0
ND1 D:HIS64 4.0 36.4 1.0
CG D:HIS64 4.0 36.1 1.0
NE2 D:HIS66 4.0 35.3 1.0
ND1 D:HIS398 4.1 39.2 1.0
CG D:HIS398 4.1 38.4 1.0
N D:GLY67 4.2 33.2 1.0
CB D:HIS66 4.2 33.0 1.0
C D:HIS66 4.6 33.0 1.0
N D:HIS66 4.7 32.3 1.0
CA D:HIS400 4.8 33.6 1.0
CB D:HIS400 4.9 33.1 1.0
O D:LEU399 5.0 34.2 1.0

Reference:

T.Bertrand, C.Jolivalt, P.Briozzo, E.Caminade, N.Joly, C.Madzak, C.Mougin. Crystal Structure of A Four-Copper Laccase Complexed with An Arylamine: Insights Into Substrate Recognition and Correlation with Kinetics. Biochemistry V. 41 7325 2002.
ISSN: ISSN 0006-2960
PubMed: 12044164
DOI: 10.1021/BI0201318
Page generated: Wed Oct 28 14:15:29 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy