Copper in PDB 1kv7: Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis
Protein crystallography data
The structure of Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis, PDB code: 1kv7
was solved by
S.A.Roberts,
A.Weichsel,
G.Grass,
K.Thakali,
J.T.Hazzard,
G.Tollin,
C.Rensing,
W.R.Montfort,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
26.00 /
1.40
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
49.820,
90.510,
53.090,
90.00,
102.90,
90.00
|
R / Rfree (%)
|
18.5 /
22.1
|
Copper Binding Sites:
The binding sites of Copper atom in the Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis
(pdb code 1kv7). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the
Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis, PDB code: 1kv7:
Jump to Copper binding site number:
1;
2;
3;
4;
Copper binding site 1 out
of 4 in 1kv7
Go back to
Copper Binding Sites List in 1kv7
Copper binding site 1 out
of 4 in the Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu701
b:10.7
occ:1.00
|
ND1
|
A:HIS505
|
2.0
|
11.6
|
1.0
|
ND1
|
A:HIS443
|
2.0
|
11.4
|
1.0
|
SG
|
A:CYS500
|
2.2
|
11.7
|
1.0
|
CE1
|
A:HIS443
|
3.0
|
11.2
|
1.0
|
CE1
|
A:HIS505
|
3.0
|
12.6
|
1.0
|
CG
|
A:HIS505
|
3.0
|
9.3
|
1.0
|
CG
|
A:HIS443
|
3.1
|
9.5
|
1.0
|
CB
|
A:CYS500
|
3.2
|
10.8
|
1.0
|
SD
|
A:MET510
|
3.2
|
13.1
|
1.0
|
CB
|
A:HIS505
|
3.3
|
9.6
|
1.0
|
CB
|
A:HIS443
|
3.5
|
12.0
|
1.0
|
CA
|
A:HIS443
|
3.7
|
11.3
|
1.0
|
O
|
A:LEU442
|
3.7
|
14.5
|
1.0
|
CE
|
A:MET510
|
4.1
|
12.4
|
1.0
|
CB
|
A:LEU502
|
4.1
|
9.6
|
1.0
|
NE2
|
A:HIS505
|
4.1
|
11.9
|
1.0
|
NE2
|
A:HIS443
|
4.1
|
10.3
|
1.0
|
CD2
|
A:HIS505
|
4.2
|
12.1
|
1.0
|
CD2
|
A:HIS443
|
4.2
|
11.3
|
1.0
|
C
|
A:LEU442
|
4.4
|
10.4
|
1.0
|
N
|
A:HIS443
|
4.4
|
9.1
|
1.0
|
CA
|
A:CYS500
|
4.6
|
12.0
|
1.0
|
CD1
|
A:LEU502
|
4.7
|
10.8
|
1.0
|
CG
|
A:MET510
|
4.7
|
11.7
|
1.0
|
CA
|
A:HIS505
|
4.8
|
10.7
|
1.0
|
C
|
A:HIS443
|
4.9
|
10.6
|
1.0
|
CG
|
A:LEU502
|
4.9
|
11.0
|
1.0
|
N
|
A:LEU502
|
4.9
|
8.7
|
1.0
|
O
|
A:LEU502
|
4.9
|
10.6
|
1.0
|
|
Copper binding site 2 out
of 4 in 1kv7
Go back to
Copper Binding Sites List in 1kv7
Copper binding site 2 out
of 4 in the Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu703
b:30.4
occ:1.00
|
NE2
|
A:HIS446
|
1.8
|
11.6
|
1.0
|
NE2
|
A:HIS101
|
1.9
|
13.9
|
1.0
|
CD2
|
A:HIS446
|
2.7
|
11.8
|
1.0
|
CE1
|
A:HIS101
|
2.8
|
18.9
|
1.0
|
CD2
|
A:HIS101
|
2.9
|
13.7
|
1.0
|
CE1
|
A:HIS446
|
2.9
|
12.3
|
1.0
|
O
|
A:HOH2018
|
3.0
|
15.8
|
1.0
|
O1
|
A:C2O702
|
3.1
|
14.2
|
1.0
|
CD2
|
A:HIS448
|
3.2
|
13.6
|
1.0
|
NE2
|
A:HIS448
|
3.2
|
11.7
|
1.0
|
ND1
|
A:HIS103
|
3.5
|
10.7
|
1.0
|
CG
|
A:HIS103
|
3.5
|
8.4
|
1.0
|
CU2
|
A:C2O702
|
3.5
|
22.5
|
1.0
|
CA
|
A:HIS103
|
3.7
|
10.6
|
1.0
|
CB
|
A:HIS103
|
3.8
|
9.1
|
1.0
|
CG
|
A:HIS448
|
3.9
|
12.2
|
1.0
|
CG
|
A:HIS446
|
3.9
|
12.8
|
1.0
|
CE1
|
A:HIS448
|
3.9
|
17.4
|
1.0
|
ND1
|
A:HIS101
|
3.9
|
13.5
|
1.0
|
ND1
|
A:HIS446
|
4.0
|
14.7
|
1.0
|
CU3
|
A:C2O702
|
4.0
|
14.8
|
1.0
|
CG
|
A:HIS101
|
4.0
|
11.4
|
1.0
|
CE1
|
A:HIS103
|
4.0
|
7.7
|
1.0
|
CD2
|
A:HIS103
|
4.1
|
9.3
|
1.0
|
ND1
|
A:HIS448
|
4.2
|
15.0
|
1.0
|
NE2
|
A:HIS103
|
4.4
|
10.4
|
1.0
|
N
|
A:GLY104
|
4.5
|
9.8
|
1.0
|
N
|
A:HIS103
|
4.6
|
10.6
|
1.0
|
C
|
A:HIS103
|
4.6
|
9.8
|
1.0
|
CA
|
A:HIS448
|
4.7
|
10.5
|
1.0
|
CB
|
A:HIS448
|
4.8
|
10.9
|
1.0
|
NE2
|
A:HIS499
|
4.8
|
11.7
|
1.0
|
O
|
A:TRP102
|
4.9
|
10.5
|
1.0
|
NE2
|
A:HIS141
|
5.0
|
12.9
|
1.0
|
O
|
A:HOH2058
|
5.0
|
16.6
|
1.0
|
|
Copper binding site 3 out
of 4 in 1kv7
Go back to
Copper Binding Sites List in 1kv7
Copper binding site 3 out
of 4 in the Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu702
b:22.5
occ:1.00
|
CU2
|
A:C2O702
|
0.0
|
22.5
|
1.0
|
NE2
|
A:HIS448
|
1.9
|
11.7
|
1.0
|
NE2
|
A:HIS143
|
2.0
|
18.2
|
1.0
|
NE2
|
A:HIS499
|
2.0
|
11.7
|
1.0
|
O1
|
A:C2O702
|
2.3
|
14.2
|
1.0
|
CE1
|
A:HIS448
|
2.8
|
17.4
|
1.0
|
CD2
|
A:HIS499
|
3.0
|
12.6
|
1.0
|
CD2
|
A:HIS143
|
3.0
|
20.3
|
1.0
|
CE1
|
A:HIS499
|
3.0
|
15.2
|
1.0
|
CD2
|
A:HIS448
|
3.0
|
13.6
|
1.0
|
CE1
|
A:HIS143
|
3.0
|
15.4
|
1.0
|
CU
|
A:CU703
|
3.5
|
30.4
|
1.0
|
O
|
A:HOH2353
|
3.6
|
31.1
|
1.0
|
CD2
|
A:HIS446
|
3.6
|
11.8
|
1.0
|
NE2
|
A:HIS101
|
3.9
|
13.9
|
1.0
|
ND1
|
A:HIS448
|
4.0
|
15.0
|
1.0
|
CD2
|
A:HIS101
|
4.0
|
13.7
|
1.0
|
ND1
|
A:HIS499
|
4.1
|
13.2
|
1.0
|
CG
|
A:HIS499
|
4.1
|
10.9
|
1.0
|
CG
|
A:HIS448
|
4.1
|
12.2
|
1.0
|
ND1
|
A:HIS143
|
4.1
|
19.7
|
1.0
|
CG
|
A:HIS143
|
4.1
|
15.2
|
1.0
|
NE2
|
A:HIS446
|
4.1
|
11.6
|
1.0
|
CB
|
A:MET497
|
4.5
|
13.4
|
1.0
|
CE1
|
A:HIS101
|
4.6
|
18.9
|
1.0
|
CU3
|
A:C2O702
|
4.7
|
14.8
|
1.0
|
CG
|
A:HIS101
|
4.7
|
11.4
|
1.0
|
CG
|
A:HIS446
|
4.8
|
12.8
|
1.0
|
OE1
|
A:GLU506
|
4.9
|
20.0
|
1.0
|
CD2
|
A:HIS501
|
5.0
|
13.9
|
1.0
|
CE1
|
A:HIS141
|
5.0
|
11.7
|
1.0
|
|
Copper binding site 4 out
of 4 in 1kv7
Go back to
Copper Binding Sites List in 1kv7
Copper binding site 4 out
of 4 in the Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Crystal Structure of Cueo, A Multi-Copper Oxidase From E. Coli Involved in Copper Homeostasis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu702
b:14.8
occ:1.00
|
CU3
|
A:C2O702
|
0.0
|
14.8
|
1.0
|
ND1
|
A:HIS103
|
2.0
|
10.7
|
1.0
|
NE2
|
A:HIS141
|
2.0
|
12.9
|
1.0
|
NE2
|
A:HIS501
|
2.1
|
11.6
|
1.0
|
O1
|
A:C2O702
|
2.4
|
14.2
|
1.0
|
CE1
|
A:HIS103
|
2.8
|
7.7
|
1.0
|
CE1
|
A:HIS141
|
2.9
|
11.7
|
1.0
|
CD2
|
A:HIS141
|
3.0
|
9.8
|
1.0
|
CE1
|
A:HIS501
|
3.0
|
13.2
|
1.0
|
CD2
|
A:HIS501
|
3.1
|
13.9
|
1.0
|
CG
|
A:HIS103
|
3.1
|
8.4
|
1.0
|
CB
|
A:HIS103
|
3.5
|
9.1
|
1.0
|
CZ2
|
A:TRP139
|
3.7
|
8.3
|
1.0
|
O
|
A:HOH2353
|
3.9
|
31.1
|
1.0
|
CU
|
A:CU703
|
4.0
|
30.4
|
1.0
|
NE2
|
A:HIS103
|
4.0
|
10.4
|
1.0
|
CE2
|
A:TRP139
|
4.1
|
7.2
|
1.0
|
ND1
|
A:HIS141
|
4.1
|
13.3
|
1.0
|
CD2
|
A:HIS103
|
4.1
|
9.3
|
1.0
|
CG
|
A:HIS141
|
4.1
|
9.2
|
1.0
|
CD2
|
A:HIS101
|
4.1
|
13.7
|
1.0
|
NE1
|
A:TRP139
|
4.2
|
10.1
|
1.0
|
ND1
|
A:HIS501
|
4.2
|
13.6
|
1.0
|
CG
|
A:HIS501
|
4.2
|
11.2
|
1.0
|
CD2
|
A:HIS446
|
4.3
|
11.8
|
1.0
|
NE2
|
A:HIS446
|
4.4
|
11.6
|
1.0
|
CH2
|
A:TRP139
|
4.4
|
9.8
|
1.0
|
NE2
|
A:HIS101
|
4.5
|
13.9
|
1.0
|
CU2
|
A:C2O702
|
4.7
|
22.5
|
1.0
|
CA
|
A:HIS103
|
4.8
|
10.6
|
1.0
|
|
Reference:
S.A.Roberts,
A.Weichsel,
G.Grass,
K.Thakali,
J.T.Hazzard,
G.Tollin,
C.Rensing,
W.R.Montfort.
Crystal Structure and Electron Transfer Kinetics of Cueo, A Multicopper Oxidase Required For Copper Homeostasis in Escherichia Coli. Proc.Natl.Acad.Sci.Usa V. 99 2766 2002.
ISSN: ISSN 0027-8424
PubMed: 11867755
DOI: 10.1073/PNAS.052710499
Page generated: Tue Jul 30 22:11:43 2024
|