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Copper in PDB 1ksi: Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution

Enzymatic activity of Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution

All present enzymatic activity of Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution:
1.4.3.6;

Protein crystallography data

The structure of Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution, PDB code: 1ksi was solved by M.C.J.Wilce, V.Kumar, H.C.Freeman, J.M.Guss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.370, 114.640, 199.940, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1ksi:

The structure of Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution (pdb code 1ksi). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution, PDB code: 1ksi:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1ksi

Go back to Copper Binding Sites List in 1ksi
Copper binding site 1 out of 2 in the Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu650

b:24.2
occ:1.00
O A:HOH659 2.0 28.7 1.0
NE2 A:HIS444 2.1 18.5 1.0
NE2 A:HIS442 2.1 15.0 1.0
ND1 A:HIS603 2.2 18.7 1.0
O A:HOH658 2.4 24.7 1.0
CE1 A:HIS444 2.9 16.3 1.0
CD2 A:HIS442 3.0 11.8 1.0
CE1 A:HIS603 3.1 17.1 1.0
CE1 A:HIS442 3.2 12.0 1.0
CD2 A:HIS444 3.2 18.1 1.0
CG A:HIS603 3.2 17.2 1.0
CB A:HIS603 3.6 18.8 1.0
ND1 A:HIS444 4.1 17.3 1.0
CG A:HIS442 4.2 12.4 1.0
ND1 A:HIS442 4.2 12.7 1.0
NE2 A:HIS603 4.3 15.9 1.0
CG A:HIS444 4.3 18.4 1.0
CD2 A:HIS603 4.3 17.7 1.0
O A:HOH755 4.5 17.9 1.0
CD1 A:LEU407 4.9 19.8 1.0

Copper binding site 2 out of 2 in 1ksi

Go back to Copper Binding Sites List in 1ksi
Copper binding site 2 out of 2 in the Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu650

b:24.7
occ:1.00
O B:HOH659 2.0 32.3 1.0
NE2 B:HIS444 2.1 15.5 1.0
ND1 B:HIS603 2.2 18.3 1.0
NE2 B:HIS442 2.2 18.6 1.0
O B:HOH658 2.5 27.2 1.0
CE1 B:HIS444 3.0 12.7 1.0
CE1 B:HIS603 3.1 17.0 1.0
CD2 B:HIS442 3.2 15.3 1.0
CG B:HIS603 3.2 17.4 1.0
CE1 B:HIS442 3.2 14.2 1.0
CD2 B:HIS444 3.2 15.4 1.0
CB B:HIS603 3.5 18.0 1.0
ND1 B:HIS444 4.1 13.4 1.0
NE2 B:HIS603 4.3 17.2 1.0
CD2 B:HIS603 4.3 17.9 1.0
CG B:HIS444 4.3 14.2 1.0
CG B:HIS442 4.3 16.8 1.0
ND1 B:HIS442 4.3 16.6 1.0
O B:HOH666 4.5 14.3 1.0

Reference:

V.Kumar, D.M.Dooley, H.C.Freeman, J.M.Guss, I.Harvey, M.A.Mcguirl, M.C.Wilce, V.M.Zubak. Crystal Structure of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase at 2.2 A Resolution. Structure V. 4 943 1996.
ISSN: ISSN 0969-2126
PubMed: 8805580
DOI: 10.1016/S0969-2126(96)00101-3
Page generated: Wed Oct 28 14:15:26 2020
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