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Copper in PDB 1jzg: Pseudomonas Aeruginosa Reduced Azurin (CU1+) Ru(Tpy)(Phen) (HIS83)

Protein crystallography data

The structure of Pseudomonas Aeruginosa Reduced Azurin (CU1+) Ru(Tpy)(Phen) (HIS83), PDB code: 1jzg was solved by B.R.Crane, A.J.Di Bilio, J.R.Winkler, H.B.Gray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.83 / 1.40
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 52.747, 61.608, 76.187, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 23.2

Other elements in 1jzg:

The structure of Pseudomonas Aeruginosa Reduced Azurin (CU1+) Ru(Tpy)(Phen) (HIS83) also contains other interesting chemical elements:

Ruthenium (Ru) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Pseudomonas Aeruginosa Reduced Azurin (CU1+) Ru(Tpy)(Phen) (HIS83) (pdb code 1jzg). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Pseudomonas Aeruginosa Reduced Azurin (CU1+) Ru(Tpy)(Phen) (HIS83), PDB code: 1jzg:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1jzg

Go back to Copper Binding Sites List in 1jzg
Copper binding site 1 out of 2 in the Pseudomonas Aeruginosa Reduced Azurin (CU1+) Ru(Tpy)(Phen) (HIS83)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Pseudomonas Aeruginosa Reduced Azurin (CU1+) Ru(Tpy)(Phen) (HIS83) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu901

b:12.9
occ:1.00
ND1 A:HIS46 2.1 12.8 1.0
ND1 A:HIS117 2.1 13.6 1.0
SG A:CYS112 2.2 11.8 1.0
O A:GLY45 2.7 13.8 1.0
CE1 A:HIS46 2.9 12.7 1.0
CE1 A:HIS117 3.1 13.7 1.0
CG A:HIS117 3.1 13.7 1.0
CG A:HIS46 3.1 12.8 1.0
SD A:MET121 3.3 12.7 1.0
CB A:CYS112 3.3 10.9 1.0
CA A:HIS46 3.4 12.9 1.0
CB A:HIS117 3.4 13.7 1.0
CB A:HIS46 3.6 12.9 1.0
C A:GLY45 3.6 14.1 1.0
CB A:PHE114 3.8 13.2 1.0
CE A:MET121 3.9 12.8 1.0
N A:HIS46 3.9 13.5 1.0
NE2 A:HIS46 4.1 12.8 1.0
NE2 A:HIS117 4.2 13.8 1.0
CD2 A:HIS46 4.2 12.8 1.0
CD2 A:HIS117 4.3 13.7 1.0
C A:HIS46 4.6 12.7 1.0
CG A:PHE114 4.6 13.5 1.0
N A:ASN47 4.6 12.4 1.0
CA A:CYS112 4.7 11.2 1.0
N A:PHE114 4.8 12.6 1.0
CG A:MET121 4.8 12.8 1.0
CA A:PHE114 4.9 13.1 1.0
CA A:HIS117 5.0 13.9 1.0
CA A:GLY45 5.0 14.7 1.0

Copper binding site 2 out of 2 in 1jzg

Go back to Copper Binding Sites List in 1jzg
Copper binding site 2 out of 2 in the Pseudomonas Aeruginosa Reduced Azurin (CU1+) Ru(Tpy)(Phen) (HIS83)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Pseudomonas Aeruginosa Reduced Azurin (CU1+) Ru(Tpy)(Phen) (HIS83) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu902

b:26.6
occ:0.50
CU A:IMF902 0.0 26.6 0.5
NEM A:IMF902 2.0 24.6 1.0
NEC A:IMF902 2.1 16.5 0.5
O1 A:IMF902 2.7 32.3 1.0
CEL A:IMF902 2.9 24.2 1.0
CEB A:IMF902 3.0 16.5 0.5
CDM A:IMF902 3.0 24.6 1.0
CDC A:IMF902 3.1 16.5 0.5
NDL A:IMF902 4.1 24.6 1.0
NDB A:IMF902 4.1 16.5 0.5
CG2 A:IMF902 4.2 24.4 1.0
CG1 A:IMF902 4.2 16.5 0.5
O A:LYS24 4.5 19.8 1.0

Reference:

B.R.Crane, A.J.Di Bilio, J.R.Winkler, H.B.Gray. Electron Tunneling in Single Crystals of Pseudomonas Aeruginosa Azurins. J.Am.Chem.Soc. V. 123 11623 2001.
ISSN: ISSN 0002-7863
PubMed: 11716717
DOI: 10.1021/JA0115870
Page generated: Sun Dec 13 10:59:51 2020

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