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Copper in PDB 1jze: Pseudomonas Aeruginosa Azurin Ru(Bpy)2(Im)(HIS83)

Protein crystallography data

The structure of Pseudomonas Aeruginosa Azurin Ru(Bpy)2(Im)(HIS83), PDB code: 1jze was solved by B.R.Crane, A.J.Di Bilio, J.R.Winkler, H.B.Gray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.72 / 1.60
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.430, 61.760, 68.780, 90.00, 90.00, 90.00
R / Rfree (%) 24.9 / 27.4

Other elements in 1jze:

The structure of Pseudomonas Aeruginosa Azurin Ru(Bpy)2(Im)(HIS83) also contains other interesting chemical elements:

Ruthenium (Ru) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Pseudomonas Aeruginosa Azurin Ru(Bpy)2(Im)(HIS83) (pdb code 1jze). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Pseudomonas Aeruginosa Azurin Ru(Bpy)2(Im)(HIS83), PDB code: 1jze:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1jze

Go back to Copper Binding Sites List in 1jze
Copper binding site 1 out of 2 in the Pseudomonas Aeruginosa Azurin Ru(Bpy)2(Im)(HIS83)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Pseudomonas Aeruginosa Azurin Ru(Bpy)2(Im)(HIS83) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu901

b:17.7
occ:1.00
ND1 A:HIS46 2.0 19.5 1.0
ND1 A:HIS117 2.0 17.7 1.0
SG A:CYS112 2.2 17.2 1.0
O A:GLY45 2.7 18.1 1.0
CE1 A:HIS46 2.8 19.4 1.0
CE1 A:HIS117 2.9 16.7 1.0
CG A:HIS117 3.0 18.1 1.0
CG A:HIS46 3.1 18.9 1.0
SD A:MET121 3.1 20.1 1.0
CB A:CYS112 3.3 17.9 1.0
CA A:HIS46 3.4 17.3 1.0
CB A:HIS117 3.4 20.6 1.0
CB A:HIS46 3.5 17.0 1.0
CE A:MET121 3.6 23.6 1.0
C A:GLY45 3.6 17.9 1.0
CB A:PHE114 3.9 15.3 1.0
N A:HIS46 3.9 17.2 1.0
NE2 A:HIS46 4.0 19.0 1.0
NE2 A:HIS117 4.0 18.2 1.0
CD2 A:HIS46 4.1 19.4 1.0
CD2 A:HIS117 4.1 17.3 1.0
C A:HIS46 4.5 17.1 1.0
N A:ASN47 4.6 16.8 1.0
CG A:MET121 4.6 23.1 1.0
CA A:CYS112 4.7 18.5 1.0
CG A:PHE114 4.7 15.5 1.0
N A:PHE114 4.8 16.0 1.0
CB A:MET121 4.9 25.0 1.0
CA A:HIS117 4.9 22.1 1.0
CA A:PHE114 5.0 16.7 1.0
CA A:GLY45 5.0 18.4 1.0
O A:MET44 5.0 20.8 1.0

Copper binding site 2 out of 2 in 1jze

Go back to Copper Binding Sites List in 1jze
Copper binding site 2 out of 2 in the Pseudomonas Aeruginosa Azurin Ru(Bpy)2(Im)(HIS83)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Pseudomonas Aeruginosa Azurin Ru(Bpy)2(Im)(HIS83) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu902

b:22.2
occ:0.50
O A:ALA1 2.4 42.1 1.0
N A:ALA1 2.8 42.3 1.0
C A:ALA1 3.0 42.1 1.0
CA A:ALA1 3.0 42.4 1.0
O A:HOH386 3.9 47.2 0.5
O A:HOH387 4.0 36.2 0.5
N A:GLU2 4.3 42.3 1.0
SG A:CYS3 4.3 26.4 1.0
CB A:ALA1 4.5 41.8 1.0
O A:HOH430 4.8 37.9 1.0
CA A:GLU2 4.8 41.6 1.0

Reference:

B.R.Crane, A.J.Di Bilio, J.R.Winkler, H.B.Gray. Electron Tunneling in Single Crystals of Pseudomonas Aeruginosa Azurins. J.Am.Chem.Soc. V. 123 11623 2001.
ISSN: ISSN 0002-7863
PubMed: 11716717
DOI: 10.1021/JA0115870
Page generated: Sun Dec 13 10:59:49 2020

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