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Copper in PDB 1jvl: Azurin Dimer, Covalently Crosslinked Through Bis- Maleimidomethylether

Protein crystallography data

The structure of Azurin Dimer, Covalently Crosslinked Through Bis- Maleimidomethylether, PDB code: 1jvl was solved by I.M.C.Van Amsterdam, M.Ubbink, O.Einsle, A.Messerschmidt, A.Merli, D.Cavazzini, G.L.Rossi, G.W.Canters, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 48.605, 48.605, 284.809, 90.00, 90.00, 120.00
R / Rfree (%) 19 / 22.7

Other elements in 1jvl:

The structure of Azurin Dimer, Covalently Crosslinked Through Bis- Maleimidomethylether also contains other interesting chemical elements:

Nickel (Ni) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Azurin Dimer, Covalently Crosslinked Through Bis- Maleimidomethylether (pdb code 1jvl). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Azurin Dimer, Covalently Crosslinked Through Bis- Maleimidomethylether, PDB code: 1jvl:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1jvl

Go back to Copper Binding Sites List in 1jvl
Copper binding site 1 out of 2 in the Azurin Dimer, Covalently Crosslinked Through Bis- Maleimidomethylether


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Azurin Dimer, Covalently Crosslinked Through Bis- Maleimidomethylether within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu129

b:39.4
occ:1.00
ND1 A:HIS46 2.0 37.2 1.0
ND1 A:HIS117 2.2 40.7 1.0
SG A:CYS112 2.2 35.1 1.0
O A:GLY45 2.9 40.9 1.0
CE1 A:HIS46 2.9 37.1 1.0
CG A:HIS46 3.1 37.8 1.0
CG A:HIS117 3.1 43.1 1.0
SD A:MET121 3.1 40.1 1.0
CE1 A:HIS117 3.2 41.4 1.0
CB A:CYS112 3.3 33.0 1.0
CB A:HIS117 3.4 40.1 1.0
CA A:HIS46 3.4 36.2 1.0
CB A:HIS46 3.5 36.6 1.0
CE A:MET121 3.8 39.5 1.0
C A:GLY45 3.8 40.3 1.0
CB A:PHE114 3.9 39.1 1.0
N A:HIS46 4.1 38.2 1.0
NE2 A:HIS46 4.1 39.4 1.0
CD2 A:HIS46 4.2 37.9 1.0
CD2 A:HIS117 4.3 41.9 1.0
NE2 A:HIS117 4.3 41.6 1.0
C A:HIS46 4.6 36.7 1.0
N A:ASN47 4.6 35.3 1.0
CA A:CYS112 4.6 35.3 1.0
CG A:MET121 4.7 38.4 1.0
CG A:PHE114 4.8 41.9 1.0
N A:PHE114 4.8 38.0 1.0
CA A:HIS117 4.9 39.9 1.0
CA A:PHE114 5.0 38.9 1.0
CB A:MET121 5.0 38.0 1.0

Copper binding site 2 out of 2 in 1jvl

Go back to Copper Binding Sites List in 1jvl
Copper binding site 2 out of 2 in the Azurin Dimer, Covalently Crosslinked Through Bis- Maleimidomethylether


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Azurin Dimer, Covalently Crosslinked Through Bis- Maleimidomethylether within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu129

b:39.4
occ:1.00
ND1 B:HIS46 2.0 35.7 1.0
ND1 B:HIS117 2.2 40.4 1.0
SG B:CYS112 2.2 36.2 1.0
O B:GLY45 2.9 40.4 1.0
CE1 B:HIS46 2.9 36.8 1.0
CG B:HIS46 3.1 37.2 1.0
CG B:HIS117 3.1 42.5 1.0
SD B:MET121 3.1 40.2 1.0
CE1 B:HIS117 3.2 39.6 1.0
CB B:CYS112 3.2 33.8 1.0
CB B:HIS117 3.4 38.8 1.0
CA B:HIS46 3.4 36.5 1.0
CB B:HIS46 3.5 35.2 1.0
CE B:MET121 3.8 39.5 1.0
C B:GLY45 3.8 41.2 1.0
CB B:PHE114 3.9 38.3 1.0
N B:HIS46 4.1 38.6 1.0
NE2 B:HIS46 4.1 38.5 1.0
CD2 B:HIS46 4.2 36.6 1.0
CD2 B:HIS117 4.3 41.1 1.0
NE2 B:HIS117 4.3 40.9 1.0
C B:HIS46 4.6 36.9 1.0
CA B:CYS112 4.6 34.8 1.0
N B:ASN47 4.6 35.3 1.0
CG B:MET121 4.7 39.0 1.0
CG B:PHE114 4.8 41.2 1.0
N B:PHE114 4.8 37.2 1.0
CA B:HIS117 4.9 39.5 1.0
CA B:PHE114 5.0 38.0 1.0
CB B:MET121 5.0 37.9 1.0

Reference:

I.M.C.Van Amsterdam, M.Ubbink, O.Einsle, A.Messerschmidt, A.Merli, D.Cavazzini, G.L.Rossi, G.W.Canters. Dramatic Modulation of Electron Transfer in Protein Complexes By Crosslinking Nat.Struct.Biol. V. 9 48 2002.
ISSN: ISSN 1072-8368
PubMed: 11740504
DOI: 10.1038/NSB736
Page generated: Sun Dec 13 10:59:44 2020

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