Atomistry » Copper » PDB 1hc1-1jvo » 1juh
Atomistry »
  Copper »
    PDB 1hc1-1jvo »
      1juh »

Copper in PDB 1juh: Crystal Structure of Quercetin 2,3-Dioxygenase

Enzymatic activity of Crystal Structure of Quercetin 2,3-Dioxygenase

All present enzymatic activity of Crystal Structure of Quercetin 2,3-Dioxygenase:
1.13.11.24;

Protein crystallography data

The structure of Crystal Structure of Quercetin 2,3-Dioxygenase, PDB code: 1juh was solved by F.Fusetti, K.H.Schroeter, R.A.Steiner, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.20 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 108.550, 55.780, 123.680, 90.00, 98.31, 90.00
R / Rfree (%) 16.2 / 18.9

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Quercetin 2,3-Dioxygenase (pdb code 1juh). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure of Quercetin 2,3-Dioxygenase, PDB code: 1juh:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 1juh

Go back to Copper Binding Sites List in 1juh
Copper binding site 1 out of 4 in the Crystal Structure of Quercetin 2,3-Dioxygenase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Quercetin 2,3-Dioxygenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu401

b:16.5
occ:1.00
NE2 A:HIS68 2.1 15.3 1.0
NE2 A:HIS112 2.1 14.4 1.0
NE2 A:HIS66 2.2 16.1 1.0
OE1 A:GLU73 2.2 25.4 0.5
O A:HOH2339 2.2 12.5 0.5
O A:HOH2339 2.6 25.9 0.5
CE1 A:HIS112 3.0 15.0 1.0
CD2 A:HIS68 3.0 13.3 1.0
CE1 A:HIS68 3.0 13.6 1.0
CE1 A:HIS66 3.1 15.9 1.0
CD2 A:HIS66 3.1 16.6 1.0
CD2 A:HIS112 3.1 14.7 1.0
CD A:GLU73 3.2 22.9 0.5
OE2 A:GLU73 3.7 24.2 0.5
O1 A:EDO2009 3.9 45.2 1.0
CG A:GLU73 3.9 15.2 0.5
C1 A:EDO2009 4.0 39.4 1.0
ND1 A:HIS68 4.1 16.7 1.0
ND1 A:HIS112 4.1 12.3 1.0
OE2 A:GLU73 4.1 19.1 0.5
CG A:HIS68 4.1 14.6 1.0
ND1 A:HIS66 4.2 15.4 1.0
CG A:HIS112 4.2 12.5 1.0
CG A:HIS66 4.2 14.9 1.0
CD A:GLU73 4.5 16.6 0.5
CG A:GLU73 4.5 20.1 0.5
CB A:GLU73 4.7 16.8 0.5
CB A:GLU73 4.7 15.1 0.5
C2 A:EDO2009 4.8 39.9 1.0

Copper binding site 2 out of 4 in 1juh

Go back to Copper Binding Sites List in 1juh
Copper binding site 2 out of 4 in the Crystal Structure of Quercetin 2,3-Dioxygenase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Quercetin 2,3-Dioxygenase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu402

b:17.3
occ:1.00
OE1 B:GLU73 2.1 24.3 0.5
NE2 B:HIS112 2.1 16.0 1.0
NE2 B:HIS68 2.1 16.2 1.0
O B:HOH2317 2.2 17.9 0.5
NE2 B:HIS66 2.2 18.3 1.0
O B:HOH2317 2.3 22.6 0.5
CE1 B:HIS112 3.0 18.6 1.0
CD2 B:HIS68 3.0 17.7 1.0
CE1 B:HIS68 3.0 16.8 1.0
CD2 B:HIS112 3.1 14.7 1.0
CD2 B:HIS66 3.1 16.8 1.0
CD B:GLU73 3.2 22.2 0.5
CE1 B:HIS66 3.2 15.4 1.0
OE2 B:GLU73 3.6 22.4 0.5
CG B:GLU73 3.8 17.2 0.5
OE2 B:GLU73 4.0 15.4 0.5
ND1 B:HIS112 4.1 16.4 1.0
ND1 B:HIS68 4.1 16.6 1.0
CG B:HIS68 4.1 16.9 1.0
CG B:HIS112 4.2 14.6 1.0
O B:HOH2449 4.2 38.7 1.0
ND1 B:HIS66 4.2 17.4 1.0
CG B:HIS66 4.3 16.3 1.0
CD B:GLU73 4.4 16.7 0.5
CG B:GLU73 4.4 20.0 0.5
CB B:GLU73 4.6 17.9 0.5
CB B:GLU73 4.6 16.9 0.5
CZ B:PHE132 4.8 34.0 1.0
CZ B:PHE75 4.9 18.9 1.0

Copper binding site 3 out of 4 in 1juh

Go back to Copper Binding Sites List in 1juh
Copper binding site 3 out of 4 in the Crystal Structure of Quercetin 2,3-Dioxygenase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Quercetin 2,3-Dioxygenase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu403

b:18.9
occ:1.00
OE1 C:GLU73 2.1 25.8 0.5
NE2 C:HIS68 2.1 18.5 1.0
NE2 C:HIS112 2.1 16.7 1.0
NE2 C:HIS66 2.2 19.3 1.0
O C:HOH2321 2.2 19.2 0.5
O C:HOH2321 2.2 25.3 0.5
CE1 C:HIS112 3.0 17.8 1.0
CD2 C:HIS68 3.0 19.3 1.0
CE1 C:HIS68 3.1 19.9 1.0
CE1 C:HIS66 3.1 19.1 1.0
CD2 C:HIS66 3.1 18.2 1.0
CD C:GLU73 3.2 25.2 0.5
CD2 C:HIS112 3.2 15.1 1.0
OE2 C:GLU73 3.6 22.7 0.5
CG C:GLU73 3.9 15.5 0.5
OE2 C:GLU73 4.1 18.3 0.5
ND1 C:HIS112 4.1 15.9 1.0
CG C:HIS68 4.1 19.1 1.0
ND1 C:HIS68 4.1 16.9 1.0
ND1 C:HIS66 4.2 19.1 1.0
CG C:HIS112 4.2 15.7 1.0
CG C:HIS66 4.2 16.9 1.0
O C:HOH2289 4.3 33.8 1.0
CG C:GLU73 4.5 21.3 0.5
CD C:GLU73 4.5 16.6 0.5
CZ C:PHE132 4.6 28.6 1.0
CB C:GLU73 4.6 20.0 0.5
CB C:GLU73 4.7 17.7 0.5
CZ C:PHE75 4.9 18.2 1.0

Copper binding site 4 out of 4 in 1juh

Go back to Copper Binding Sites List in 1juh
Copper binding site 4 out of 4 in the Crystal Structure of Quercetin 2,3-Dioxygenase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Quercetin 2,3-Dioxygenase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu404

b:17.6
occ:1.00
OE1 D:GLU73 2.0 28.5 0.5
NE2 D:HIS68 2.1 19.8 1.0
NE2 D:HIS112 2.1 18.3 1.0
NE2 D:HIS66 2.1 18.7 1.0
O D:HOH2318 2.2 12.6 0.5
O D:HOH2318 2.9 25.7 0.5
CD2 D:HIS68 3.0 19.2 1.0
CE1 D:HIS112 3.0 17.9 1.0
CD D:GLU73 3.0 27.6 0.5
CE1 D:HIS68 3.1 18.6 1.0
CE1 D:HIS66 3.1 19.2 1.0
CD2 D:HIS66 3.1 15.6 1.0
CD2 D:HIS112 3.2 15.8 1.0
OE2 D:GLU73 3.3 28.7 0.5
O D:HOH2419 3.7 39.4 1.0
CG D:GLU73 3.8 17.6 0.5
CG D:HIS68 4.1 20.4 1.0
OE2 D:GLU73 4.1 19.5 0.5
ND1 D:HIS68 4.1 19.4 1.0
ND1 D:HIS112 4.1 13.5 1.0
ND1 D:HIS66 4.2 20.0 1.0
CG D:HIS66 4.2 16.5 1.0
CG D:HIS112 4.3 14.7 1.0
CG D:GLU73 4.4 25.1 0.5
CD D:GLU73 4.4 18.1 0.5
O D:HOH2332 4.4 44.7 1.0
CB D:GLU73 4.7 20.1 0.5
CB D:GLU73 4.7 16.7 0.5

Reference:

F.Fusetti, K.H.Schroter, R.A.Steiner, P.I.Van Noort, T.Pijning, H.J.Rozeboom, K.H.Kalk, M.R.Egmond, B.W.Dijkstra. Crystal Structure of the Copper-Containing Quercetin 2,3-Dioxygenase From Aspergillus Japonicus. Structure V. 10 259 2002.
ISSN: ISSN 0969-2126
PubMed: 11839311
DOI: 10.1016/S0969-2126(02)00704-9
Page generated: Sun Dec 13 10:59:44 2020

Last articles

Zn in 7O75
Zn in 7O73
Zn in 7O4I
Zn in 7O72
Zn in 7O4J
Zn in 7NVR
Zn in 7NVY
Zn in 7NVZ
Zn in 7NW0
Zn in 7O4K
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy