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Copper in PDB 1js8: Structure of A Functional Unit From Octopus Hemocyanin

Protein crystallography data

The structure of Structure of A Functional Unit From Octopus Hemocyanin, PDB code: 1js8 was solved by M.E.Cuff, K.I.Miller, K.E.Van Holde, W.A.Hendrickson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 92.860, 168.390, 58.290, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 26.2

Copper Binding Sites:

The binding sites of Copper atom in the Structure of A Functional Unit From Octopus Hemocyanin (pdb code 1js8). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Structure of A Functional Unit From Octopus Hemocyanin, PDB code: 1js8:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 1js8

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Copper binding site 1 out of 4 in the Structure of A Functional Unit From Octopus Hemocyanin


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of A Functional Unit From Octopus Hemocyanin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu888

b:10.3
occ:1.00
CU1 A:CUO888 0.0 10.3 1.0
O2 A:CUO888 1.8 11.5 1.0
O1 A:CUO888 1.9 9.8 1.0
NE2 A:HIS2702 2.1 7.5 1.0
NE2 A:HIS2675 2.1 3.8 1.0
NE2 A:HIS2671 2.2 14.1 1.0
CE1 A:HIS2702 2.9 6.7 1.0
CE1 A:HIS2675 3.0 2.7 1.0
CD2 A:HIS2671 3.0 11.7 1.0
CD2 A:HIS2675 3.2 9.0 1.0
CD2 A:HIS2702 3.3 2.8 1.0
CE1 A:HIS2671 3.3 7.5 1.0
CU2 A:CUO888 3.5 12.8 1.0
ND1 A:HIS2702 4.1 5.1 1.0
ND1 A:HIS2675 4.1 6.6 1.0
CG A:HIS2671 4.2 6.8 1.0
CG A:HIS2675 4.2 4.3 1.0
CD2 A:HIS2571 4.3 2.0 1.0
CG A:HIS2702 4.3 2.3 1.0
ND1 A:HIS2671 4.3 13.6 1.0
CE2 A:PHE2567 4.3 2.0 1.0
NE2 A:HIS2571 4.4 2.0 1.0
CE2 A:PHE2698 4.4 4.1 1.0
CD2 A:LEU2830 4.4 9.2 1.0
NE2 A:HIS2701 4.5 3.0 1.0
CD2 A:HIS2701 4.6 3.8 1.0
CZ A:PHE2567 4.6 3.4 1.0

Copper binding site 2 out of 4 in 1js8

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Copper binding site 2 out of 4 in the Structure of A Functional Unit From Octopus Hemocyanin


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of A Functional Unit From Octopus Hemocyanin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu888

b:12.8
occ:1.00
CU2 A:CUO888 0.0 12.8 1.0
O1 A:CUO888 1.9 9.8 1.0
O2 A:CUO888 2.0 11.5 1.0
NE2 A:HIS2562 2.2 16.7 1.0
NE2 A:HIS2543 2.3 8.6 1.0
NE2 A:HIS2571 2.3 2.0 1.0
CD2 A:HIS2543 3.0 2.4 1.0
CD2 A:HIS2562 3.1 12.2 1.0
CD2 A:HIS2571 3.2 2.0 1.0
CE1 A:HIS2562 3.2 14.3 1.0
CE1 A:HIS2571 3.3 2.6 1.0
CE1 A:HIS2543 3.4 10.7 1.0
CU1 A:CUO888 3.5 10.3 1.0
SG A:CYS2560 3.9 2.8 1.0
CD2 A:LEU2830 4.0 9.2 1.0
CB A:CYS2560 4.1 2.0 1.0
CG A:HIS2543 4.2 9.0 1.0
CG A:HIS2562 4.3 14.7 1.0
ND1 A:HIS2562 4.3 10.2 1.0
ND1 A:HIS2543 4.4 10.6 1.0
CG A:HIS2571 4.4 2.0 1.0
ND1 A:HIS2571 4.4 2.9 1.0
NE2 A:HIS2702 4.5 7.5 1.0
CE2 A:PHE2698 4.5 4.1 1.0
CZ A:PHE2698 4.8 9.5 1.0
CE1 A:HIS2675 4.9 2.7 1.0
CE2 A:PHE2567 4.9 2.0 1.0
NE2 A:HIS2675 4.9 3.8 1.0
CE1 A:HIS2702 4.9 6.7 1.0
NE2 A:HIS2671 5.0 14.1 1.0

Copper binding site 3 out of 4 in 1js8

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Copper binding site 3 out of 4 in the Structure of A Functional Unit From Octopus Hemocyanin


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure of A Functional Unit From Octopus Hemocyanin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu999

b:17.3
occ:1.00
CU1 B:CUO999 0.0 17.3 1.0
O2 B:CUO999 1.9 15.6 1.0
O1 B:CUO999 1.9 11.3 1.0
NE2 B:HIS2675 2.2 5.7 1.0
NE2 B:HIS2702 2.2 5.9 1.0
NE2 B:HIS2671 2.3 18.8 1.0
CE1 B:HIS2702 2.9 4.0 1.0
CE1 B:HIS2675 3.0 5.8 1.0
CD2 B:HIS2671 3.1 18.8 1.0
CD2 B:HIS2675 3.3 10.2 1.0
CE1 B:HIS2671 3.3 13.8 1.0
CD2 B:HIS2702 3.4 5.3 1.0
CU2 B:CUO999 3.5 22.9 1.0
ND1 B:HIS2675 4.1 9.1 1.0
ND1 B:HIS2702 4.1 5.9 1.0
CG B:HIS2671 4.3 14.0 1.0
CE1 B:PHE2567 4.3 2.0 1.0
CD2 B:HIS2571 4.3 2.0 1.0
CG B:HIS2675 4.3 8.3 1.0
ND1 B:HIS2671 4.4 20.7 1.0
CE2 B:PHE2698 4.4 13.1 1.0
CD2 B:LEU2830 4.4 12.2 1.0
NE2 B:HIS2571 4.4 2.6 1.0
CG B:HIS2702 4.4 7.2 1.0
CZ B:PHE2567 4.5 2.0 1.0
NE2 B:HIS2701 4.5 7.8 1.0
CD2 B:HIS2701 4.6 6.3 1.0
CD2 B:PHE2698 5.0 11.4 1.0
CZ B:PHE2698 5.0 13.7 1.0

Copper binding site 4 out of 4 in 1js8

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Copper binding site 4 out of 4 in the Structure of A Functional Unit From Octopus Hemocyanin


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Structure of A Functional Unit From Octopus Hemocyanin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu999

b:22.9
occ:1.00
CU2 B:CUO999 0.0 22.9 1.0
O2 B:CUO999 1.9 15.6 1.0
O1 B:CUO999 1.9 11.3 1.0
NE2 B:HIS2562 2.3 19.8 1.0
NE2 B:HIS2571 2.3 2.6 1.0
NE2 B:HIS2543 2.4 11.4 1.0
CD2 B:HIS2562 3.0 15.7 1.0
CD2 B:HIS2543 3.1 3.5 1.0
CD2 B:HIS2571 3.2 2.0 1.0
CE1 B:HIS2571 3.3 3.1 1.0
CE1 B:HIS2562 3.3 17.0 1.0
CU1 B:CUO999 3.5 17.3 1.0
CE1 B:HIS2543 3.5 15.1 1.0
SG B:CYS2560 4.0 10.3 1.0
CB B:CYS2560 4.1 11.0 1.0
CD2 B:LEU2830 4.1 12.2 1.0
CG B:HIS2562 4.2 17.7 1.0
CG B:HIS2543 4.3 10.8 1.0
ND1 B:HIS2562 4.3 18.4 1.0
CG B:HIS2571 4.3 2.0 1.0
ND1 B:HIS2571 4.3 6.3 1.0
ND1 B:HIS2543 4.5 13.4 1.0
CE2 B:PHE2698 4.6 13.1 1.0
NE2 B:HIS2702 4.6 5.9 1.0
CE1 B:PHE2567 4.7 2.0 1.0
CZ B:PHE2698 4.8 13.7 1.0
CE1 B:HIS2675 4.9 5.8 1.0
NE2 B:HIS2675 4.9 5.7 1.0
CE1 B:HIS2702 5.0 4.0 1.0
NE2 B:HIS2671 5.0 18.8 1.0

Reference:

M.E.Cuff, K.I.Miller, K.E.Van Holde, W.A.Hendrickson. Crystal Structure of A Functional Unit From Octopus Hemocyanin. J.Mol.Biol. V. 278 855 1998.
ISSN: ISSN 0022-2836
PubMed: 9614947
DOI: 10.1006/JMBI.1998.1647
Page generated: Sun Dec 13 10:59:42 2020

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