Copper in the structure of X-Ray Structure Analysis Of The Role Of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase (pdb 1jrq)

The binding sites of Copper atom in the structure of X-Ray Structure Analysis Of The Role Of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase (pdb code 1jrq). This binding sites where shown with 5.0 Angstroms radius around Copper atom. The 1jrq structure was solved by J.M.MURRAY, C.R.KURTIS, W.TAMBARAJAH, C.G.SAYSELL, C.M.WILMOT, M.R.PARSONS, S.E.V.PHILLIPS, P.F.KNOWLES, M.J.MCPHERSON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-2.1 Space group P212121 a (A) 134.540 b (A) 166.450 c (A) 79.380 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.5 Rfree (%) 23.5 Copper Binding Sites: Copper binding site 1 out of 2 in 1jrq Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 1jrq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Tpq466, A: His524, A: His526, A: His613, A: His689, A: Met699, A: Hoh964, A: Hoh1216, A: Hoh1255, A: Hoh1522, conact list: Atom Atom Distance (A) Cu O4 A:Tpq466 4.94 Cu NE2 A:His524 2.28 Cu ND1 A:His524 4.28 Cu CD2 A:His524 3.15 Cu CE1 A:His524 3.20 Cu CG A:His524 4.27 Cu NE2 A:His526 2.17 Cu ND1 A:His526 4.23 Cu CD2 A:His526 2.84 Cu CE1 A:His526 3.29 Cu CG A:His526 4.06 Cu CE1 A:His613 4.73 Cu NE2 A:His689 4.23 Cu CB A:His689 3.41 Cu ND1 A:His689 2.25 Cu CD2 A:His689 4.27 Cu CE1 A:His689 3.14 Cu CG A:His689 3.18 Cu CA A:His689 4.95 Cu SD A:Met699 4.77 Cu O A:Hoh964 3.71 Cu O A:Hoh1216 2.66 Cu O A:Hoh1255 3.74 Cu O A:Hoh1522 4.45 interactive model: Copper binding site 2 out of 2 in 1jrq Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 1jrq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Tpq466, B: His524, B: His526, B: His613, B: His689, B: Met699, B: Hoh818, B: Hoh997, B: Hoh1017, B: Hoh1154, B: Hoh1201, B: Hoh1324, conact list: Atom Atom Distance (A) Cu O5 B:Tpq466 4.28 Cu C5 B:Tpq466 4.64 Cu C4 B:Tpq466 4.75 Cu O4 B:Tpq466 4.56 Cu NE2 B:His524 2.31 Cu ND1 B:His524 4.30 Cu CD2 B:His524 3.17 Cu CE1 B:His524 3.24 Cu CG B:His524 4.28 Cu NE2 B:His526 2.30 Cu ND1 B:His526 4.37 Cu CD2 B:His526 2.98 Cu CE1 B:His526 3.40 Cu CG B:His526 4.20 Cu NE2 B:His613 4.92 Cu NE2 B:His689 4.38 Cu CB B:His689 3.39 Cu ND1 B:His689 2.35 Cu CD2 B:His689 4.37 Cu CE1 B:His689 3.31 Cu CG B:His689 3.22 Cu CA B:His689 4.93 Cu SD B:Met699 4.73 Cu O B:Hoh818 4.70 Cu O B:Hoh997 4.17 Cu O B:Hoh1017 2.72 Cu O B:Hoh1154 3.62 Cu O B:Hoh1201 2.38 Cu O B:Hoh1324 4.88 interactive model: