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Copper in PDB 1joi: Structure of Pseudomonas Fluorescens Holo Azurin

Protein crystallography data

The structure of Structure of Pseudomonas Fluorescens Holo Azurin, PDB code: 1joi was solved by X.Lee, H.Ton-That, D.-W.Zhu, J.Biesterfedlt, P.H.Lanthier, M.Yachuchi, T.Dahms, A.G.Szabo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 31.950, 43.780, 78.810, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 24.1

Copper Binding Sites:

The binding sites of Copper atom in the Structure of Pseudomonas Fluorescens Holo Azurin (pdb code 1joi). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Structure of Pseudomonas Fluorescens Holo Azurin, PDB code: 1joi:

Copper binding site 1 out of 1 in 1joi

Go back to Copper Binding Sites List in 1joi
Copper binding site 1 out of 1 in the Structure of Pseudomonas Fluorescens Holo Azurin


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of Pseudomonas Fluorescens Holo Azurin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu129

b:9.1
occ:1.00
ND1 A:HIS117 2.0 5.8 1.0
SG A:CYS112 2.1 3.6 1.0
ND1 A:HIS46 2.1 2.5 1.0
O A:GLY45 3.0 6.1 1.0
CG A:HIS117 3.0 8.9 1.0
CE1 A:HIS117 3.0 7.3 1.0
CG A:HIS46 3.1 2.5 1.0
CE1 A:HIS46 3.1 2.5 1.0
SD A:MET121 3.2 5.5 1.0
CB A:CYS112 3.3 2.5 1.0
CB A:HIS117 3.4 3.5 1.0
CB A:HIS46 3.4 3.1 1.0
CA A:HIS46 3.4 5.3 1.0
CE A:MET121 3.7 4.8 1.0
CB A:PHE114 3.8 7.3 1.0
C A:GLY45 3.9 7.5 1.0
N A:HIS46 4.1 4.6 1.0
NE2 A:HIS117 4.2 9.6 1.0
CD2 A:HIS117 4.2 8.0 1.0
NE2 A:HIS46 4.2 3.8 1.0
CD2 A:HIS46 4.3 2.5 1.0
C A:HIS46 4.6 4.4 1.0
CG A:PHE114 4.7 4.6 1.0
CA A:CYS112 4.7 4.9 1.0
N A:ASN47 4.7 5.2 1.0
CG A:MET121 4.7 2.5 1.0
N A:PHE114 4.8 6.8 1.0
CA A:HIS117 4.9 6.2 1.0
CA A:PHE114 4.9 6.6 1.0

Reference:

D.W.Zhu, T.Dahms, K.Willis, A.G.Szabo, X.Lee. Crystallization and Preliminary Crystallographic Studies of the Crystals of the Azurin Pseudomonas Fluorescens. Arch.Biochem.Biophys. V. 308 469 1994.
ISSN: ISSN 0003-9861
PubMed: 8109977
DOI: 10.1006/ABBI.1994.1066
Page generated: Thu Sep 3 16:02:07 2020
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