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Copper in PDB 1jcv: Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure

Enzymatic activity of Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure

All present enzymatic activity of Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure:
1.15.1.1;

Protein crystallography data

The structure of Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure, PDB code: 1jcv was solved by N.L.Ogihara, H.E.Parge, P.J.Hart, M.S.Weiss, J.S.Valentine, D.S.Eisenberg, J.A.Tainer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.55
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 118.390, 118.390, 73.500, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Other elements in 1jcv:

The structure of Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure (pdb code 1jcv). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure, PDB code: 1jcv:

Copper binding site 1 out of 1 in 1jcv

Go back to Copper Binding Sites List in 1jcv
Copper binding site 1 out of 1 in the Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu154

b:18.9
occ:1.00
NE2 A:HIS48 2.1 10.9 1.0
ND1 A:HIS46 2.1 12.5 1.0
NE2 A:HIS120 2.1 10.7 1.0
CD2 A:HIS120 3.0 10.8 1.0
CE1 A:HIS48 3.0 10.1 1.0
CD2 A:HIS48 3.1 11.6 1.0
CE1 A:HIS46 3.1 13.0 1.0
CG A:HIS46 3.1 12.3 1.0
NE2 A:HIS63 3.2 11.9 1.0
CE1 A:HIS120 3.2 11.1 1.0
CB A:HIS46 3.4 11.9 1.0
CD2 A:HIS63 3.5 11.2 1.0
O A:HOH426 3.7 19.9 1.0
O A:HOH430 3.8 16.3 1.0
CB A:VAL118 4.0 11.0 1.0
CG1 A:VAL118 4.0 11.4 1.0
CE1 A:HIS63 4.1 11.2 1.0
ND1 A:HIS48 4.2 11.2 1.0
CG A:HIS120 4.2 10.9 1.0
NE2 A:HIS46 4.2 12.1 1.0
CG A:HIS48 4.2 11.3 1.0
ND1 A:HIS120 4.2 10.7 1.0
CD2 A:HIS46 4.2 12.2 1.0
N A:HIS46 4.2 11.2 1.0
CA A:HIS46 4.3 10.9 1.0
O A:VAL118 4.4 11.2 1.0
CG A:HIS63 4.6 11.5 1.0
O A:HIS46 4.7 9.7 1.0
C A:HIS46 4.7 10.3 1.0
ND1 A:HIS63 4.8 12.6 1.0
C A:VAL118 4.9 11.2 1.0
CG2 A:VAL118 4.9 10.0 1.0

Reference:

N.L.Ogihara, H.E.Parge, P.J.Hart, M.S.Weiss, J.J.Goto, B.R.Crane, J.Tsang, K.Slater, J.A.Roe, J.S.Valentine, D.Eisenberg, J.A.Tainer. Unusual Trigonal-Planar Copper Configuration Revealed in the Atomic Structure of Yeast Copper-Zinc Superoxide Dismutase. Biochemistry V. 35 2316 1996.
ISSN: ISSN 0006-2960
PubMed: 8652572
DOI: 10.1021/BI951930B
Page generated: Sun Dec 13 10:59:39 2020

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