Atomistry » Copper » PDB 1hc1-1jvo » 1ivx
Atomistry »
  Copper »
    PDB 1hc1-1jvo »
      1ivx »

Copper in PDB 1ivx: Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Holo Form Generated By Biogenesis in Crystal.

Enzymatic activity of Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Holo Form Generated By Biogenesis in Crystal.

All present enzymatic activity of Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Holo Form Generated By Biogenesis in Crystal.:
1.4.3.6;

Protein crystallography data

The structure of Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Holo Form Generated By Biogenesis in Crystal., PDB code: 1ivx was solved by M.Kim, T.Okajima, S.Kishishita, M.Yoshimura, A.Kawamori, K.Tanizawa, H.Yamaguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.20
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 158.076, 63.390, 184.018, 90.00, 111.60, 90.00
R / Rfree (%) 21.7 / 29.2

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Holo Form Generated By Biogenesis in Crystal. (pdb code 1ivx). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Holo Form Generated By Biogenesis in Crystal., PDB code: 1ivx:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1ivx

Go back to Copper Binding Sites List in 1ivx
Copper binding site 1 out of 2 in the Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Holo Form Generated By Biogenesis in Crystal.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Holo Form Generated By Biogenesis in Crystal. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1001

b:10.3
occ:1.00
NE2 A:HIS431 1.9 3.7 1.0
O A:HOH1002 2.0 2.0 1.0
ND1 A:HIS592 2.1 19.6 1.0
NE2 A:HIS433 2.2 17.1 1.0
CD2 A:HIS431 2.9 2.6 1.0
O A:HOH1003 2.9 26.1 1.0
CE1 A:HIS431 3.0 2.0 1.0
CD2 A:HIS433 3.0 9.9 1.0
CG A:HIS592 3.0 19.9 1.0
CE1 A:HIS592 3.1 14.8 1.0
CB A:HIS592 3.2 17.8 1.0
CE1 A:HIS433 3.2 12.5 1.0
O A:HOH1578 3.8 27.9 1.0
ND1 A:HIS431 4.0 3.7 1.0
CG A:HIS431 4.0 2.0 1.0
CD2 A:HIS592 4.2 16.7 1.0
NE2 A:HIS592 4.2 17.4 1.0
CG A:HIS433 4.2 13.8 1.0
ND1 A:HIS433 4.3 12.2 1.0
O A:HOH1004 4.3 10.3 1.0
O2 A:TPQ382 4.4 24.6 1.0
O A:HOH1005 4.4 23.7 1.0
CA A:HIS592 4.8 17.7 1.0
CE A:MET602 4.8 26.0 1.0
SD A:MET602 4.9 22.8 1.0

Copper binding site 2 out of 2 in 1ivx

Go back to Copper Binding Sites List in 1ivx
Copper binding site 2 out of 2 in the Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Holo Form Generated By Biogenesis in Crystal.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Holo Form Generated By Biogenesis in Crystal. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1002

b:9.1
occ:1.00
O B:HOH1659 2.0 4.8 1.0
NE2 B:HIS431 2.0 5.9 1.0
ND1 B:HIS592 2.0 18.1 1.0
NE2 B:HIS433 2.2 17.9 1.0
CD2 B:HIS433 2.9 10.9 1.0
CD2 B:HIS431 3.0 5.0 1.0
O B:HOH1003 3.0 16.3 1.0
CG B:HIS592 3.0 18.3 1.0
CE1 B:HIS592 3.0 16.5 1.0
CE1 B:HIS431 3.1 2.0 1.0
CE1 B:HIS433 3.3 11.6 1.0
CB B:HIS592 3.3 16.9 1.0
O B:HOH1444 4.0 43.6 1.0
CG B:HIS431 4.1 3.4 1.0
ND1 B:HIS431 4.1 2.0 1.0
NE2 B:HIS592 4.1 15.6 1.0
CG B:HIS433 4.1 13.9 1.0
CD2 B:HIS592 4.2 19.6 1.0
ND1 B:HIS433 4.3 12.2 1.0
O2 B:TPQ382 4.4 16.4 0.8
O B:HOH1004 4.4 5.5 1.0
O B:HOH1349 4.7 21.3 1.0
CE B:MET602 4.7 29.5 1.0
CA B:HIS592 4.9 13.8 1.0
O B:HOH1006 4.9 26.1 1.0
SD B:MET602 4.9 19.6 1.0

Reference:

M.Kim, T.Okajima, S.Kishishita, M.Yoshimura, A.Kawamori, K.Tanizawa, H.Yamaguchi. X-Ray Snapshots of Quinone Cofactor Biogenesis in Bacterial Copper Amine Oxidase. Nat.Struct.Biol. V. 9 591 2002.
ISSN: ISSN 1072-8368
PubMed: 12134140
DOI: 10.1038/NSB824
Page generated: Sun Dec 13 10:59:33 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy