Atomistry » Copper » PDB 1hc1-1jvo » 1ivw
Atomistry »
  Copper »
    PDB 1hc1-1jvo »
      1ivw »

Copper in PDB 1ivw: Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Late Intermediate in Topaquinone Biogenesis

Enzymatic activity of Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Late Intermediate in Topaquinone Biogenesis

All present enzymatic activity of Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Late Intermediate in Topaquinone Biogenesis:
1.4.3.6;

Protein crystallography data

The structure of Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Late Intermediate in Topaquinone Biogenesis, PDB code: 1ivw was solved by M.Kim, T.Okajima, S.Kishishita, M.Yoshimura, A.Kawamori, K.Tanizawa, H.Yamaguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.00 / 1.80
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 157.007, 62.896, 182.834, 90.00, 111.82, 90.00
R / Rfree (%) 21 / 26.2

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Late Intermediate in Topaquinone Biogenesis (pdb code 1ivw). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Late Intermediate in Topaquinone Biogenesis, PDB code: 1ivw:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1ivw

Go back to Copper Binding Sites List in 1ivw
Copper binding site 1 out of 2 in the Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Late Intermediate in Topaquinone Biogenesis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Late Intermediate in Topaquinone Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1001

b:14.8
occ:1.00
NE2 A:HIS431 1.9 3.8 1.0
ND1 A:HIS592 2.0 16.2 1.0
NE2 A:HIS433 2.1 14.8 1.0
O4 A:TPQ382 2.7 21.2 1.0
CD2 A:HIS431 2.9 4.9 1.0
CE1 A:HIS431 2.9 6.3 1.0
CD2 A:HIS433 2.9 10.0 1.0
CG A:HIS592 3.0 16.4 1.0
CE1 A:HIS592 3.1 20.2 1.0
CE1 A:HIS433 3.2 12.3 1.0
CB A:HIS592 3.3 13.1 1.0
O A:HOH1006 3.4 28.7 1.0
C4 A:TPQ382 3.4 18.8 1.0
O5 A:TPQ382 3.8 31.5 1.0
C5 A:TPQ382 3.9 21.0 1.0
ND1 A:HIS431 4.0 7.2 1.0
CG A:HIS431 4.0 5.7 1.0
CG A:HIS433 4.1 14.3 1.0
CD2 A:HIS592 4.2 15.3 1.0
NE2 A:HIS592 4.2 16.3 1.0
C3 A:TPQ382 4.3 15.3 1.0
ND1 A:HIS433 4.3 8.8 1.0
O A:HOH1005 4.3 38.5 1.0
O A:HOH1002 4.4 12.9 1.0
SD A:MET602 4.8 19.2 1.0
CA A:HIS592 4.8 13.0 1.0

Copper binding site 2 out of 2 in 1ivw

Go back to Copper Binding Sites List in 1ivw
Copper binding site 2 out of 2 in the Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Late Intermediate in Topaquinone Biogenesis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Copper Amine Oxidase From Arthrobacter Globiformis: Late Intermediate in Topaquinone Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1002

b:18.5
occ:1.00
NE2 B:HIS431 2.0 10.4 1.0
ND1 B:HIS592 2.1 21.1 1.0
NE2 B:HIS433 2.1 15.2 1.0
CD2 B:HIS433 3.0 10.9 1.0
O4 B:TPQ382 3.0 18.8 1.0
CE1 B:HIS431 3.0 10.1 1.0
CD2 B:HIS431 3.0 10.7 1.0
CG B:HIS592 3.1 17.6 1.0
CE1 B:HIS592 3.1 20.7 1.0
CE1 B:HIS433 3.3 14.0 1.0
CB B:HIS592 3.4 12.8 1.0
C4 B:TPQ382 3.6 18.2 1.0
O5 B:TPQ382 4.0 28.6 1.0
ND1 B:HIS431 4.1 11.2 1.0
C5 B:TPQ382 4.1 14.7 1.0
CG B:HIS431 4.2 10.9 1.0
CG B:HIS433 4.2 11.7 1.0
NE2 B:HIS592 4.3 18.6 1.0
CD2 B:HIS592 4.3 16.1 1.0
ND1 B:HIS433 4.3 12.1 1.0
O B:HOH1486 4.3 48.3 1.0
C3 B:TPQ382 4.4 18.7 1.0
SD B:MET602 4.6 20.8 1.0
O B:HOH1109 4.7 11.3 1.0
CE B:MET602 4.7 23.7 1.0
CA B:HIS592 5.0 15.1 1.0

Reference:

M.Kim, T.Okajima, S.Kishishita, M.Yoshimura, A.Kawamori, K.Tanizawa, H.Yamaguchi. X-Ray Snapshots of Quinone Cofactor Biogenesis in Bacterial Copper Amine Oxidase. Nat.Struct.Biol. V. 9 591 2002.
ISSN: ISSN 1072-8368
PubMed: 12134140
DOI: 10.1038/NSB824
Page generated: Sun Dec 13 10:59:32 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy