Copper in PDB 1ils: X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa
Protein crystallography data
The structure of X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa, PDB code: 1ils
was solved by
C.Hammann,
H.Nar,
R.Huber,
A.Messerschmidt,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.20
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.600,
80.700,
110.000,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.9 /
n/a
|
Copper Binding Sites:
The binding sites of Copper atom in the X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa
(pdb code 1ils). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the
X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa, PDB code: 1ils:
Jump to Copper binding site number:
1;
2;
3;
4;
Copper binding site 1 out
of 4 in 1ils
Go back to
Copper Binding Sites List in 1ils
Copper binding site 1 out
of 4 in the X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu129
b:12.6
occ:1.00
|
ND1
|
A:HIS117
|
1.9
|
7.6
|
1.0
|
ND1
|
A:HIS46
|
1.9
|
10.2
|
1.0
|
SG
|
A:CYS112
|
2.3
|
14.0
|
1.0
|
CE1
|
A:HIS46
|
2.9
|
8.3
|
1.0
|
CE1
|
A:HIS117
|
2.9
|
4.9
|
1.0
|
CG
|
A:HIS117
|
3.0
|
6.3
|
1.0
|
CG
|
A:HIS46
|
3.0
|
10.1
|
1.0
|
O
|
A:GLY45
|
3.0
|
12.3
|
1.0
|
SD
|
A:MET121
|
3.0
|
6.1
|
1.0
|
CB
|
A:HIS117
|
3.4
|
6.0
|
1.0
|
CB
|
A:CYS112
|
3.4
|
11.3
|
1.0
|
CB
|
A:HIS46
|
3.5
|
8.8
|
1.0
|
CA
|
A:HIS46
|
3.5
|
7.7
|
1.0
|
CB
|
A:PHE114
|
3.9
|
7.4
|
1.0
|
NE2
|
A:HIS46
|
4.0
|
11.4
|
1.0
|
NE2
|
A:HIS117
|
4.0
|
6.5
|
1.0
|
C
|
A:GLY45
|
4.0
|
9.3
|
1.0
|
CD2
|
A:HIS117
|
4.1
|
5.7
|
1.0
|
CE
|
A:MET121
|
4.1
|
6.6
|
1.0
|
H
|
A:PHE114
|
4.1
|
20.0
|
1.0
|
CD2
|
A:HIS46
|
4.1
|
7.6
|
1.0
|
N
|
A:HIS46
|
4.3
|
8.2
|
1.0
|
H
|
A:ASN47
|
4.3
|
20.0
|
1.0
|
CG
|
A:MET121
|
4.5
|
8.4
|
1.0
|
CG
|
A:PHE114
|
4.7
|
7.4
|
1.0
|
C
|
A:HIS46
|
4.8
|
8.2
|
1.0
|
CA
|
A:CYS112
|
4.8
|
10.9
|
1.0
|
N
|
A:PHE114
|
4.8
|
11.8
|
1.0
|
CA
|
A:HIS117
|
4.9
|
7.5
|
1.0
|
HE2
|
A:HIS46
|
4.9
|
20.0
|
1.0
|
HE2
|
A:HIS117
|
4.9
|
20.0
|
1.0
|
N
|
A:ASN47
|
4.9
|
5.9
|
1.0
|
CA
|
A:PHE114
|
5.0
|
9.4
|
1.0
|
CB
|
A:MET121
|
5.0
|
8.8
|
1.0
|
|
Copper binding site 2 out
of 4 in 1ils
Go back to
Copper Binding Sites List in 1ils
Copper binding site 2 out
of 4 in the X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu129
b:12.4
occ:1.00
|
ND1
|
B:HIS117
|
1.8
|
9.3
|
1.0
|
ND1
|
B:HIS46
|
2.1
|
10.5
|
1.0
|
SG
|
B:CYS112
|
2.3
|
9.4
|
1.0
|
CE1
|
B:HIS117
|
2.7
|
6.9
|
1.0
|
CG
|
B:HIS117
|
2.9
|
7.5
|
1.0
|
O
|
B:GLY45
|
3.1
|
11.9
|
1.0
|
CE1
|
B:HIS46
|
3.1
|
8.4
|
1.0
|
SD
|
B:MET121
|
3.1
|
9.0
|
1.0
|
CG
|
B:HIS46
|
3.1
|
10.9
|
1.0
|
CB
|
B:CYS112
|
3.4
|
6.9
|
1.0
|
CB
|
B:HIS117
|
3.4
|
6.7
|
1.0
|
CA
|
B:HIS46
|
3.5
|
10.4
|
1.0
|
CB
|
B:HIS46
|
3.6
|
9.0
|
1.0
|
NE2
|
B:HIS117
|
3.8
|
6.7
|
1.0
|
CB
|
B:PHE114
|
3.9
|
8.3
|
1.0
|
C
|
B:GLY45
|
3.9
|
11.1
|
1.0
|
CD2
|
B:HIS117
|
4.0
|
7.1
|
1.0
|
H
|
B:ASN47
|
4.1
|
20.0
|
1.0
|
CE
|
B:MET121
|
4.1
|
5.0
|
1.0
|
N
|
B:HIS46
|
4.2
|
11.5
|
1.0
|
NE2
|
B:HIS46
|
4.2
|
4.5
|
1.0
|
H
|
B:PHE114
|
4.3
|
20.0
|
1.0
|
CD2
|
B:HIS46
|
4.3
|
5.2
|
1.0
|
CG
|
B:MET121
|
4.6
|
6.8
|
1.0
|
C
|
B:HIS46
|
4.6
|
9.5
|
1.0
|
HE2
|
B:HIS117
|
4.7
|
20.0
|
1.0
|
N
|
B:ASN47
|
4.7
|
9.0
|
1.0
|
CG
|
B:PHE114
|
4.7
|
6.6
|
1.0
|
CA
|
B:CYS112
|
4.7
|
8.6
|
1.0
|
N
|
B:PHE114
|
4.8
|
9.9
|
1.0
|
O
|
B:PHE114
|
4.9
|
4.9
|
1.0
|
CA
|
B:HIS117
|
4.9
|
7.5
|
1.0
|
CA
|
B:PHE114
|
4.9
|
7.7
|
1.0
|
CB
|
B:MET121
|
4.9
|
7.1
|
1.0
|
|
Copper binding site 3 out
of 4 in 1ils
Go back to
Copper Binding Sites List in 1ils
Copper binding site 3 out
of 4 in the X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu129
b:12.2
occ:1.00
|
ND1
|
C:HIS117
|
1.9
|
5.9
|
1.0
|
ND1
|
C:HIS46
|
2.1
|
7.9
|
1.0
|
SG
|
C:CYS112
|
2.2
|
10.9
|
1.0
|
CE1
|
C:HIS117
|
2.9
|
7.9
|
1.0
|
CG
|
C:HIS117
|
2.9
|
7.3
|
1.0
|
SD
|
C:MET121
|
3.0
|
7.5
|
1.0
|
O
|
C:GLY45
|
3.0
|
8.9
|
1.0
|
CE1
|
C:HIS46
|
3.1
|
8.3
|
1.0
|
CG
|
C:HIS46
|
3.2
|
9.0
|
1.0
|
CB
|
C:CYS112
|
3.3
|
8.8
|
1.0
|
CB
|
C:HIS117
|
3.3
|
7.2
|
1.0
|
CA
|
C:HIS46
|
3.5
|
8.0
|
1.0
|
CB
|
C:HIS46
|
3.6
|
7.8
|
1.0
|
CE
|
C:MET121
|
3.7
|
2.0
|
1.0
|
C
|
C:GLY45
|
3.9
|
8.9
|
1.0
|
CB
|
C:PHE114
|
4.0
|
3.1
|
1.0
|
NE2
|
C:HIS117
|
4.0
|
3.9
|
1.0
|
CD2
|
C:HIS117
|
4.1
|
5.0
|
1.0
|
H
|
C:ASN47
|
4.1
|
20.0
|
1.0
|
N
|
C:HIS46
|
4.2
|
6.1
|
1.0
|
NE2
|
C:HIS46
|
4.2
|
7.7
|
1.0
|
CD2
|
C:HIS46
|
4.3
|
7.1
|
1.0
|
CG
|
C:MET121
|
4.5
|
7.5
|
1.0
|
H
|
C:PHE114
|
4.5
|
20.0
|
1.0
|
CA
|
C:CYS112
|
4.7
|
6.7
|
1.0
|
C
|
C:HIS46
|
4.7
|
9.6
|
1.0
|
CA
|
C:HIS117
|
4.8
|
7.0
|
1.0
|
N
|
C:ASN47
|
4.8
|
8.4
|
1.0
|
CG
|
C:PHE114
|
4.8
|
7.0
|
1.0
|
HE2
|
C:HIS117
|
4.9
|
20.0
|
1.0
|
CB
|
C:MET121
|
4.9
|
8.6
|
1.0
|
N
|
C:PHE114
|
5.0
|
7.6
|
1.0
|
|
Copper binding site 4 out
of 4 in 1ils
Go back to
Copper Binding Sites List in 1ils
Copper binding site 4 out
of 4 in the X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of X-Ray Crystal Structure the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu129
b:12.1
occ:1.00
|
ND1
|
D:HIS117
|
2.2
|
5.5
|
1.0
|
ND1
|
D:HIS46
|
2.2
|
9.0
|
1.0
|
SG
|
D:CYS112
|
2.2
|
9.8
|
1.0
|
O
|
D:GLY45
|
2.9
|
7.6
|
1.0
|
CE1
|
D:HIS117
|
3.1
|
2.0
|
1.0
|
CG
|
D:HIS117
|
3.1
|
6.9
|
1.0
|
CE1
|
D:HIS46
|
3.1
|
9.0
|
1.0
|
CG
|
D:HIS46
|
3.2
|
8.9
|
1.0
|
SD
|
D:MET121
|
3.2
|
5.1
|
1.0
|
CB
|
D:CYS112
|
3.3
|
8.0
|
1.0
|
CB
|
D:HIS117
|
3.5
|
6.7
|
1.0
|
CA
|
D:HIS46
|
3.5
|
5.2
|
1.0
|
CB
|
D:HIS46
|
3.6
|
6.3
|
1.0
|
CB
|
D:PHE114
|
3.8
|
4.1
|
1.0
|
C
|
D:GLY45
|
3.8
|
7.1
|
1.0
|
CE
|
D:MET121
|
4.1
|
3.1
|
1.0
|
H
|
D:ASN47
|
4.1
|
20.0
|
1.0
|
N
|
D:HIS46
|
4.1
|
4.6
|
1.0
|
NE2
|
D:HIS117
|
4.2
|
2.1
|
1.0
|
H
|
D:PHE114
|
4.2
|
20.0
|
1.0
|
NE2
|
D:HIS46
|
4.3
|
8.8
|
1.0
|
CD2
|
D:HIS117
|
4.3
|
3.0
|
1.0
|
CD2
|
D:HIS46
|
4.4
|
4.8
|
1.0
|
CG
|
D:PHE114
|
4.6
|
2.5
|
1.0
|
CA
|
D:CYS112
|
4.7
|
5.7
|
1.0
|
CG
|
D:MET121
|
4.7
|
4.5
|
1.0
|
C
|
D:HIS46
|
4.7
|
4.5
|
1.0
|
N
|
D:PHE114
|
4.7
|
5.5
|
1.0
|
N
|
D:ASN47
|
4.8
|
7.0
|
1.0
|
CA
|
D:PHE114
|
4.9
|
3.8
|
1.0
|
CA
|
D:HIS117
|
5.0
|
7.5
|
1.0
|
|
Reference:
C.Hammann,
A.Messerschmidt,
R.Huber,
H.Nar,
G.Gilardi,
G.W.Canters.
X-Ray Crystal Structure of the Two Site-Specific Mutants ILE7SER and PHE110SER of Azurin From Pseudomonas Aeruginosa. J.Mol.Biol. V. 255 362 1996.
ISSN: ISSN 0022-2836
PubMed: 8568881
DOI: 10.1006/JMBI.1996.0029
Page generated: Tue Jul 30 21:58:12 2024
|