Atomistry » Copper » PDB 1hc1-1jvo » 1ic0
Atomistry »
  Copper »
    PDB 1hc1-1jvo »
      1ic0 »

Copper in PDB 1ic0: Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea

Protein crystallography data

The structure of Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea, PDB code: 1ic0 was solved by R.L.Lieberman, D.M.Arciero, A.B.Hooper, A.C.Rosenzweig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.26 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 90.903, 92.708, 97.201, 90.00, 90.00, 90.00
R / Rfree (%) 21.5 / 24.7

Copper Binding Sites:

The binding sites of Copper atom in the Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea (pdb code 1ic0). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea, PDB code: 1ic0:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 1ic0

Go back to Copper Binding Sites List in 1ic0
Copper binding site 1 out of 6 in the Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu306

b:29.5
occ:1.00
 ND1 A:HIS98 2.0 27.3 1.0
ND1 A:HIS103 2.1 28.9 1.0
OE1 A:GLU60 2.3 30.8 1.0
SG A:CYS95 2.4 32.6 1.0
CE1 A:HIS98 2.8 30.7 1.0
CE1 A:HIS103 3.1 31.2 1.0
CG A:HIS103 3.1 30.7 1.0
CG A:HIS98 3.1 28.9 1.0
CB A:CYS95 3.3 31.9 1.0
CB A:HIS103 3.4 32.1 1.0
CD A:GLU60 3.4 32.0 1.0
CB A:HIS98 3.6 28.7 1.0
NE2 A:HIS98 4.0 26.1 1.0
OE2 A:GLU60 4.0 28.8 1.0
CD2 A:HIS98 4.1 24.5 1.0
NE2 A:HIS103 4.2 31.1 1.0
CD2 A:HIS103 4.2 31.4 1.0
N A:HIS98 4.3 34.2 1.0
N A:GLY61 4.4 35.4 1.0
CG1 A:VAL33 4.4 27.3 1.0
CA A:GLU60 4.5 32.1 1.0
CB A:GLU60 4.6 34.0 1.0
CG A:GLU60 4.6 31.9 1.0
CA A:HIS98 4.6 34.5 1.0
CB A:VAL33 4.7 27.0 1.0
CA A:CYS95 4.8 29.1 1.0
CB A:LEU97 4.9 33.6 1.0
CA A:HIS103 4.9 28.6 1.0
CG2 A:VAL33 4.9 20.0 1.0
O A:SER59 5.0 34.1 1.0
C A:GLU60 5.0 35.8 1.0

Copper binding site 2 out of 6 in 1ic0

Go back to Copper Binding Sites List in 1ic0
Copper binding site 2 out of 6 in the Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu304

b:42.2
occ:1.00
 ND1 B:HIS103 2.1 37.1 1.0
ND1 B:HIS98 2.2 50.2 1.0
SG B:CYS95 2.3 38.3 1.0
OE1 B:GLU60 2.3 39.8 1.0
CE1 B:HIS98 2.9 54.7 1.0
CE1 B:HIS103 3.1 38.4 1.0
CG B:HIS103 3.1 36.2 1.0
CB B:CYS95 3.1 33.8 1.0
CG B:HIS98 3.2 49.6 1.0
CB B:HIS103 3.4 35.9 1.0
CD B:GLU60 3.6 40.1 1.0
CB B:HIS98 3.7 46.0 1.0
NE2 B:HIS98 4.0 54.3 1.0
CD2 B:HIS98 4.1 50.5 1.0
NE2 B:HIS103 4.2 37.0 1.0
N B:GLY61 4.2 35.2 1.0
CD2 B:HIS103 4.2 37.5 1.0
OE2 B:GLU60 4.3 41.6 1.0
N B:HIS98 4.3 40.3 1.0
CA B:GLU60 4.4 45.2 1.0
CB B:GLU60 4.5 40.8 1.0
CG1 B:VAL33 4.5 33.7 1.0
CG B:GLU60 4.6 41.6 1.0
CA B:CYS95 4.6 37.1 1.0
CA B:HIS98 4.6 40.9 1.0
CB B:LEU97 4.8 38.9 1.0
CB B:VAL33 4.8 35.3 1.0
C B:GLU60 4.9 45.0 1.0
CA B:HIS103 4.9 31.3 1.0
O B:GLY61 4.9 37.4 1.0

Copper binding site 3 out of 6 in 1ic0

Go back to Copper Binding Sites List in 1ic0
Copper binding site 3 out of 6 in the Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu303

b:20.9
occ:1.00
 ND1 C:HIS103 2.0 27.1 1.0
ND1 C:HIS98 2.1 26.1 1.0
OE1 C:GLU60 2.2 25.6 1.0
SG C:CYS95 2.4 26.7 1.0
CE1 C:HIS98 2.9 25.8 1.0
CE1 C:HIS103 3.0 27.4 1.0
CG C:HIS103 3.1 25.9 1.0
CG C:HIS98 3.2 23.9 1.0
CB C:CYS95 3.2 22.9 1.0
CB C:HIS103 3.4 23.7 1.0
CD C:GLU60 3.4 27.5 1.0
CB C:HIS98 3.7 27.2 1.0
OE2 C:GLU60 4.0 27.2 1.0
NE2 C:HIS98 4.0 25.0 1.0
NE2 C:HIS103 4.1 24.1 1.0
CD2 C:HIS103 4.2 25.3 1.0
CD2 C:HIS98 4.2 22.1 1.0
N C:GLY61 4.3 28.4 1.0
N C:HIS98 4.4 30.3 1.0
CG1 C:VAL33 4.4 20.8 1.0
CA C:GLU60 4.5 26.6 1.0
CB C:VAL33 4.6 22.6 1.0
CB C:GLU60 4.6 28.9 1.0
CG C:GLU60 4.6 28.0 1.0
CA C:HIS98 4.7 27.7 1.0
CG2 C:VAL33 4.7 18.6 1.0
CA C:CYS95 4.7 27.7 1.0
CA C:HIS103 4.9 24.2 1.0
CB C:LEU97 5.0 30.3 1.0

Copper binding site 4 out of 6 in 1ic0

Go back to Copper Binding Sites List in 1ic0
Copper binding site 4 out of 6 in the Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu301

b:16.8
occ:0.72
 ND1 D:HIS103 2.0 23.3 1.0
ND1 D:HIS98 2.1 22.6 1.0
OE1 D:GLU60 2.2 20.3 1.0
SG D:CYS95 2.4 27.6 1.0
CE1 D:HIS98 2.9 23.3 1.0
CE1 D:HIS103 3.0 22.7 1.0
CG D:HIS103 3.0 23.0 1.0
CG D:HIS98 3.2 20.6 1.0
CB D:CYS95 3.2 23.7 1.0
CD D:GLU60 3.4 23.8 1.0
CB D:HIS103 3.4 22.0 1.0
CB D:HIS98 3.8 19.2 1.0
OE2 D:GLU60 4.0 25.6 1.0
NE2 D:HIS98 4.0 20.8 1.0
NE2 D:HIS103 4.1 21.3 1.0
CD2 D:HIS103 4.1 23.3 1.0
CD2 D:HIS98 4.2 22.5 1.0
N D:GLY61 4.2 28.1 1.0
CG1 D:VAL33 4.3 23.3 1.0
N D:HIS98 4.4 27.7 1.0
CA D:GLU60 4.4 30.0 1.0
CB D:GLU60 4.5 19.5 1.0
CG D:GLU60 4.5 23.2 1.0
CB D:VAL33 4.6 22.8 1.0
CA D:CYS95 4.7 24.9 1.0
CA D:HIS98 4.7 25.9 1.0
CG2 D:VAL33 4.8 18.6 1.0
CB D:LEU97 4.8 32.1 1.0
CA D:HIS103 4.9 23.0 1.0
C D:GLU60 4.9 31.0 1.0
O D:GLY61 4.9 25.2 1.0

Copper binding site 5 out of 6 in 1ic0

Go back to Copper Binding Sites List in 1ic0
Copper binding site 5 out of 6 in the Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu302

b:20.3
occ:1.00
 ND1 E:HIS103 2.0 21.3 1.0
ND1 E:HIS98 2.1 24.2 1.0
SG E:CYS95 2.3 26.9 1.0
OE1 E:GLU60 2.3 22.9 1.0
CE1 E:HIS98 2.8 23.0 1.0
CE1 E:HIS103 3.0 23.9 1.0
CG E:HIS103 3.0 21.5 1.0
CB E:CYS95 3.1 21.8 1.0
CG E:HIS98 3.2 19.0 1.0
CB E:HIS103 3.4 20.7 1.0
CD E:GLU60 3.5 24.4 1.0
CB E:HIS98 3.7 21.4 1.0
NE2 E:HIS98 4.0 23.6 1.0
NE2 E:HIS103 4.1 22.0 1.0
OE2 E:GLU60 4.1 24.3 1.0
CD2 E:HIS103 4.1 23.0 1.0
CD2 E:HIS98 4.2 22.3 1.0
N E:GLY61 4.2 24.0 1.0
N E:HIS98 4.3 23.4 1.0
CG1 E:VAL33 4.5 21.6 1.0
CA E:GLU60 4.5 25.9 1.0
CB E:GLU60 4.6 23.7 1.0
CA E:CYS95 4.6 22.0 1.0
CB E:VAL33 4.6 21.9 1.0
CA E:HIS98 4.6 24.8 1.0
CG E:GLU60 4.6 23.9 1.0
CB E:LEU97 4.7 25.3 1.0
CG2 E:VAL33 4.8 16.8 1.0
CA E:HIS103 4.8 20.0 1.0
C E:GLU60 4.9 25.6 1.0

Copper binding site 6 out of 6 in 1ic0

Go back to Copper Binding Sites List in 1ic0
Copper binding site 6 out of 6 in the Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Red Copper Protein Nitrosocyanin From Nitrosomonas Europaea within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu305

b:46.4
occ:1.00
 OE1 F:GLU60 2.2 42.0 1.0
ND1 F:HIS103 2.3 30.9 1.0
ND1 F:HIS98 2.3 53.6 1.0
SG F:CYS95 2.4 39.9 1.0
CE1 F:HIS98 3.1 55.8 1.0
CG F:HIS103 3.2 29.6 1.0
CG F:HIS98 3.2 54.2 1.0
CE1 F:HIS103 3.3 29.8 1.0
CB F:CYS95 3.3 36.3 1.0
CB F:HIS103 3.4 29.7 1.0
CD F:GLU60 3.4 43.4 1.0
CB F:HIS98 3.6 49.4 1.0
OE2 F:GLU60 4.1 42.6 1.0
NE2 F:HIS98 4.1 54.1 1.0
CD2 F:HIS98 4.2 54.6 1.0
N F:GLY61 4.3 35.9 1.0
N F:HIS98 4.3 36.2 1.0
CD2 F:HIS103 4.3 31.3 1.0
NE2 F:HIS103 4.4 30.4 1.0
CA F:GLU60 4.4 38.6 1.0
CB F:GLU60 4.4 43.9 1.0
CG F:GLU60 4.5 44.2 1.0
CG1 F:VAL33 4.6 29.7 1.0
CA F:HIS98 4.6 35.1 1.0
CA F:CYS95 4.8 34.8 1.0
CB F:VAL33 4.9 27.8 1.0
CB F:LEU97 4.9 36.8 1.0
CA F:HIS103 4.9 28.7 1.0
C F:GLU60 4.9 37.1 1.0

Reference:

R.L.Lieberman, D.M.Arciero, A.B.Hooper, A.C.Rosenzweig. Crystal Structure of A Novel Red Copper Protein From Nitrosomonas Europaea. Biochemistry V. 40 5674 2001.
ISSN: ISSN 0006-2960
PubMed: 11341832
DOI: 10.1021/BI0102611
Page generated: Tue Jul 30 21:57:47 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy