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Copper in PDB 1hc1: Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution

Protein crystallography data

The structure of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution, PDB code: 1hc1 was solved by A.Volbeda, W.G.J.Hol, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 3.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 119.800, 193.100, 122.200, 90.00, 118.10, 90.00
R / Rfree (%) n/a / n/a

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution (pdb code 1hc1). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 12 binding sites of Copper where determined in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution, PDB code: 1hc1:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10; 11; 12;

Copper binding site 1 out of 12 in 1hc1

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Copper binding site 1 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu665

b:9.2
occ:1.00
NE2 A:HIS194 2.0 4.8 1.0
NE2 A:HIS198 2.1 2.0 1.0
NE2 A:HIS224 2.5 2.0 1.0
CE1 A:HIS194 2.9 3.4 1.0
CU A:CU666 2.9 10.3 1.0
CE1 A:HIS198 2.9 2.0 1.0
CD2 A:HIS194 3.1 2.3 1.0
CD2 A:HIS198 3.3 2.0 1.0
CD2 A:HIS224 3.3 2.0 1.0
CE1 A:HIS224 3.5 2.0 1.0
ND1 A:HIS194 4.1 3.6 1.0
CE1 A:PHE371 4.1 12.3 1.0
CG A:HIS194 4.1 2.5 1.0
ND1 A:HIS198 4.2 2.0 1.0
NE2 A:HIS384 4.3 9.9 1.0
CG A:HIS198 4.3 2.0 1.0
CE1 A:HIS344 4.4 2.0 1.0
CD1 A:PHE371 4.5 8.9 1.0
NE2 A:HIS344 4.5 2.0 1.0
CG A:HIS224 4.6 2.0 1.0
ND1 A:HIS224 4.6 2.0 1.0
CZ A:PHE371 4.8 13.5 1.0
NE2 A:HIS348 4.8 2.0 1.0
CE2 A:PHE380 4.8 7.0 1.0

Copper binding site 2 out of 12 in 1hc1

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Copper binding site 2 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu666

b:10.3
occ:1.00
NE2 A:HIS344 2.0 2.0 1.0
NE2 A:HIS384 2.3 9.9 1.0
NE2 A:HIS348 2.5 2.0 1.0
CE1 A:HIS344 2.6 2.0 1.0
CU A:CU665 2.9 9.2 1.0
CE1 A:HIS384 2.9 7.6 1.0
CD2 A:HIS344 3.2 2.0 1.0
CD2 A:HIS384 3.4 6.7 1.0
CE1 A:HIS348 3.5 2.0 1.0
CD2 A:HIS348 3.5 2.0 1.0
ND1 A:HIS344 3.8 2.0 1.0
NE2 A:HIS224 4.1 2.0 1.0
CG A:HIS344 4.1 2.0 1.0
ND1 A:HIS384 4.2 6.1 1.0
CD2 A:HIS224 4.2 2.0 1.0
CE2 A:PHE380 4.3 7.0 1.0
NE2 A:HIS194 4.4 4.8 1.0
CG A:HIS384 4.5 2.7 1.0
NE2 A:HIS198 4.5 2.0 1.0
CE1 A:HIS194 4.6 3.4 1.0
ND1 A:HIS348 4.6 2.0 1.0
CG A:HIS348 4.7 2.0 1.0
CE1 A:HIS198 4.7 2.0 1.0
CE1 A:PHE371 4.7 12.3 1.0
CZ A:PHE380 4.8 3.6 1.0
CE1 A:HIS224 5.0 2.0 1.0

Copper binding site 3 out of 12 in 1hc1

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Copper binding site 3 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu665

b:9.2
occ:1.00
NE2 B:HIS194 2.0 4.8 1.0
NE2 B:HIS198 2.0 2.0 1.0
CE1 B:HIS194 2.8 3.4 1.0
NE2 B:HIS224 2.8 2.0 1.0
CE1 B:HIS198 2.9 2.0 1.0
CD2 B:HIS198 2.9 2.0 1.0
CD2 B:HIS194 3.0 2.3 1.0
CD2 B:HIS224 3.5 2.0 1.0
CE1 B:PHE371 3.7 2.0 1.0
CU B:CU666 3.8 10.3 1.0
ND1 B:HIS194 3.9 3.6 1.0
CD1 B:PHE371 3.9 2.0 1.0
CG B:HIS198 4.0 2.0 1.0
CG B:HIS194 4.0 2.5 1.0
ND1 B:HIS198 4.0 2.0 1.0
CE1 B:HIS224 4.1 2.0 1.0
CZ B:PHE371 4.2 2.0 1.0
CG B:PHE371 4.6 2.0 1.0
O B:HIS194 4.7 2.0 1.0
CE2 B:PHE371 4.9 2.6 1.0
CG B:HIS224 4.9 2.0 1.0
NE2 B:HIS348 5.0 2.0 1.0

Copper binding site 4 out of 12 in 1hc1

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Copper binding site 4 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu666

b:10.3
occ:1.00
NE2 B:HIS344 2.0 2.0 1.0
NE2 B:HIS384 2.2 9.9 1.0
NE2 B:HIS348 2.7 2.0 1.0
CE1 B:HIS384 2.9 7.6 1.0
CE1 B:HIS344 2.9 2.0 1.0
CD2 B:HIS344 3.1 2.0 1.0
CD2 B:HIS384 3.3 6.7 1.0
CD2 B:HIS348 3.5 2.0 1.0
CU B:CU665 3.8 9.2 1.0
CE1 B:HIS348 3.9 2.0 1.0
CG B:HIS344 4.0 2.0 1.0
ND1 B:HIS344 4.1 2.0 1.0
ND1 B:HIS384 4.1 6.1 1.0
CD2 B:HIS224 4.2 2.0 1.0
NE2 B:HIS224 4.2 2.0 1.0
CG B:HIS384 4.3 2.7 1.0
CE1 B:PHE380 4.4 2.0 1.0
CG B:HIS348 4.8 2.0 1.0
CZ B:PHE380 5.0 2.0 1.0
ND1 B:HIS348 5.0 2.0 1.0

Copper binding site 5 out of 12 in 1hc1

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Copper binding site 5 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu665

b:9.2
occ:1.00
NE2 C:HIS198 1.9 2.0 1.0
NE2 C:HIS194 1.9 4.8 1.0
NE2 C:HIS224 2.6 2.0 1.0
CE1 C:HIS198 2.9 2.0 1.0
CD2 C:HIS194 2.9 2.3 1.0
CE1 C:HIS194 3.0 3.4 1.0
CD2 C:HIS198 3.0 2.0 1.0
CD2 C:HIS224 3.4 2.0 1.0
CU C:CU666 3.5 10.3 1.0
CE1 C:HIS224 3.7 2.0 1.0
ND1 C:HIS198 4.0 2.0 1.0
CE1 C:PHE371 4.1 4.3 1.0
CG C:HIS194 4.1 2.5 1.0
ND1 C:HIS194 4.1 3.6 1.0
CG C:HIS198 4.1 2.0 1.0
CD1 C:PHE371 4.4 2.0 1.0
CZ C:PHE371 4.6 6.2 1.0
CG C:HIS224 4.7 2.0 1.0
NE2 C:HIS384 4.7 9.9 1.0
NE2 C:HIS344 4.7 2.0 1.0
CE1 C:HIS344 4.7 2.0 1.0
ND1 C:HIS224 4.8 2.0 1.0
O C:HIS194 4.9 6.8 1.0

Copper binding site 6 out of 12 in 1hc1

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Copper binding site 6 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu666

b:10.3
occ:1.00
NE2 C:HIS344 2.0 2.0 1.0
NE2 C:HIS384 2.1 9.9 1.0
NE2 C:HIS348 2.7 2.0 1.0
CE1 C:HIS384 2.7 7.6 1.0
CE1 C:HIS344 2.8 2.0 1.0
CD2 C:HIS344 3.0 2.0 1.0
CD2 C:HIS384 3.4 6.7 1.0
CE1 C:HIS348 3.5 2.0 1.0
CU C:CU665 3.5 9.2 1.0
CD2 C:HIS348 3.6 2.0 1.0
CE1 C:PHE380 3.9 11.6 1.0
ND1 C:HIS384 4.0 6.1 1.0
ND1 C:HIS344 4.0 2.0 1.0
CG C:HIS344 4.1 2.0 1.0
CD2 C:HIS224 4.2 2.0 1.0
NE2 C:HIS224 4.3 2.0 1.0
CG C:HIS384 4.3 2.7 1.0
ND1 C:HIS348 4.6 2.0 1.0
NE2 C:HIS194 4.6 4.8 1.0
CG C:HIS348 4.7 2.0 1.0
CZ C:PHE380 4.7 7.5 1.0
CE1 C:HIS194 4.8 3.4 1.0
CD1 C:PHE380 4.9 8.1 1.0
CE1 C:PHE371 4.9 4.3 1.0
NE2 C:HIS198 4.9 2.0 1.0

Copper binding site 7 out of 12 in 1hc1

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Copper binding site 7 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu665

b:9.2
occ:1.00
NE2 D:HIS198 1.9 2.0 1.0
NE2 D:HIS194 2.0 4.8 1.0
NE2 D:HIS224 2.7 2.0 1.0
CE1 D:HIS198 2.8 2.0 1.0
CD2 D:HIS194 2.9 2.3 1.0
CE1 D:HIS194 3.0 3.4 1.0
CD2 D:HIS198 3.0 2.0 1.0
CD2 D:HIS224 3.5 2.0 1.0
CU D:CU666 3.5 10.3 1.0
CE1 D:HIS224 3.8 2.0 1.0
CE1 D:PHE371 4.0 2.0 1.0
ND1 D:HIS198 4.0 2.0 1.0
CG D:HIS198 4.1 2.0 1.0
ND1 D:HIS194 4.1 3.6 1.0
CG D:HIS194 4.1 2.5 1.0
CD1 D:PHE371 4.3 2.0 1.0
CZ D:PHE371 4.5 2.0 1.0
NE2 D:HIS384 4.6 9.9 1.0
NE2 D:HIS344 4.7 2.0 1.0
CE1 D:HIS344 4.7 2.0 1.0
CG D:HIS224 4.8 2.0 1.0
ND1 D:HIS224 4.9 2.0 1.0

Copper binding site 8 out of 12 in 1hc1

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Copper binding site 8 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu666

b:10.3
occ:1.00
NE2 D:HIS344 1.9 2.0 1.0
NE2 D:HIS384 2.1 9.9 1.0
NE2 D:HIS348 2.6 2.0 1.0
CE1 D:HIS384 2.7 7.6 1.0
CE1 D:HIS344 2.8 2.0 1.0
CD2 D:HIS344 3.0 2.0 1.0
CD2 D:HIS384 3.3 6.7 1.0
CD2 D:HIS348 3.5 2.0 1.0
CU D:CU665 3.5 9.2 1.0
CE1 D:HIS348 3.6 2.0 1.0
ND1 D:HIS384 4.0 6.1 1.0
ND1 D:HIS344 4.0 2.0 1.0
CE1 D:PHE380 4.1 14.2 1.0
CG D:HIS344 4.1 2.0 1.0
CD2 D:HIS224 4.2 2.0 1.0
CG D:HIS384 4.2 2.7 1.0
NE2 D:HIS224 4.3 2.0 1.0
CZ D:PHE380 4.6 16.3 1.0
NE2 D:HIS194 4.7 4.8 1.0
CG D:HIS348 4.7 2.0 1.0
ND1 D:HIS348 4.7 2.0 1.0
CE1 D:HIS194 4.8 3.4 1.0
CE1 D:PHE371 4.9 2.0 1.0
NE2 D:HIS198 5.0 2.0 1.0

Copper binding site 9 out of 12 in 1hc1

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Copper binding site 9 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu665

b:9.2
occ:1.00
NE2 E:HIS194 2.0 4.8 1.0
NE2 E:HIS198 2.0 2.0 1.0
CE1 E:HIS198 2.8 2.0 1.0
NE2 E:HIS224 2.9 2.0 1.0
CD2 E:HIS194 2.9 2.3 1.0
CD2 E:HIS198 2.9 2.0 1.0
CE1 E:HIS194 3.0 3.4 1.0
CU E:CU666 3.6 10.3 1.0
CD2 E:HIS224 3.7 2.0 1.0
CE1 E:HIS224 3.7 2.0 1.0
ND1 E:HIS198 3.9 2.0 1.0
CE1 E:PHE371 3.9 2.0 1.0
CG E:HIS198 4.0 2.0 1.0
CG E:HIS194 4.1 2.5 1.0
ND1 E:HIS194 4.1 3.6 1.0
CD1 E:PHE371 4.2 2.0 1.0
CZ E:PHE371 4.5 2.0 1.0
NE2 E:HIS384 4.7 9.9 1.0
CE1 E:HIS344 4.7 2.0 1.0
NE2 E:HIS344 4.7 2.0 1.0
ND1 E:HIS224 4.8 2.0 1.0
CG E:HIS224 4.8 2.0 1.0
O E:HIS194 4.9 9.4 1.0

Copper binding site 10 out of 12 in 1hc1

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Copper binding site 10 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu666

b:10.3
occ:1.00
NE2 E:HIS344 2.0 2.0 1.0
NE2 E:HIS384 2.1 9.9 1.0
NE2 E:HIS348 2.6 2.0 1.0
CE1 E:HIS384 2.7 7.6 1.0
CE1 E:HIS344 2.8 2.0 1.0
CD2 E:HIS344 3.1 2.0 1.0
CD2 E:HIS384 3.4 6.7 1.0
CE1 E:HIS348 3.5 2.0 1.0
CU E:CU665 3.6 9.2 1.0
CD2 E:HIS348 3.6 2.0 1.0
ND1 E:HIS344 4.0 2.0 1.0
ND1 E:HIS384 4.0 6.1 1.0
CE1 E:PHE380 4.1 8.7 1.0
CG E:HIS344 4.1 2.0 1.0
CG E:HIS384 4.3 2.7 1.0
ND1 E:HIS348 4.6 2.0 1.0
CZ E:PHE380 4.6 11.8 1.0
NE2 E:HIS194 4.6 4.8 1.0
CG E:HIS348 4.7 2.0 1.0
NE2 E:HIS224 4.7 2.0 1.0
CE1 E:HIS194 4.8 3.4 1.0
CE1 E:PHE371 4.9 2.0 1.0
CD2 E:HIS224 4.9 2.0 1.0

Copper binding site 11 out of 12 in 1hc1

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Copper binding site 11 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 11 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu665

b:9.2
occ:1.00
NE2 F:HIS194 1.9 4.8 1.0
NE2 F:HIS198 2.0 2.0 1.0
NE2 F:HIS224 2.6 2.0 1.0
CE1 F:HIS198 2.8 2.0 1.0
CD2 F:HIS194 2.8 2.3 1.0
CD2 F:HIS198 3.0 2.0 1.0
CE1 F:HIS194 3.0 3.4 1.0
CD2 F:HIS224 3.5 2.0 1.0
CU F:CU666 3.6 10.3 1.0
CE1 F:HIS224 3.6 2.0 1.0
ND1 F:HIS198 3.9 2.0 1.0
CE1 F:PHE371 4.0 4.8 1.0
CG F:HIS194 4.0 2.5 1.0
CG F:HIS198 4.0 2.0 1.0
ND1 F:HIS194 4.1 3.6 1.0
CD1 F:PHE371 4.3 2.0 1.0
CZ F:PHE371 4.6 10.6 1.0
CG F:HIS224 4.7 2.0 1.0
NE2 F:HIS344 4.7 2.0 1.0
CE1 F:HIS344 4.7 2.0 1.0
ND1 F:HIS224 4.7 2.0 1.0
NE2 F:HIS384 4.7 9.9 1.0
O F:HIS194 4.9 11.6 1.0

Copper binding site 12 out of 12 in 1hc1

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Copper binding site 12 out of 12 in the Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 12 of Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu666

b:10.3
occ:1.00
NE2 F:HIS344 2.0 2.0 1.0
NE2 F:HIS384 2.1 9.9 1.0
NE2 F:HIS348 2.7 2.0 1.0
CE1 F:HIS384 2.7 7.6 1.0
CE1 F:HIS344 2.8 2.0 1.0
CD2 F:HIS344 3.1 2.0 1.0
CD2 F:HIS384 3.3 6.7 1.0
CU F:CU665 3.6 9.2 1.0
CD2 F:HIS348 3.6 2.0 1.0
CE1 F:HIS348 3.6 2.0 1.0
ND1 F:HIS344 4.0 2.0 1.0
ND1 F:HIS384 4.0 6.1 1.0
CE1 F:PHE380 4.1 2.0 1.0
NE2 F:HIS224 4.1 2.0 1.0
CG F:HIS344 4.1 2.0 1.0
CD2 F:HIS224 4.3 2.0 1.0
CG F:HIS384 4.3 2.7 1.0
NE2 F:HIS194 4.6 4.8 1.0
CZ F:PHE380 4.6 2.0 1.0
ND1 F:HIS348 4.7 2.0 1.0
CG F:HIS348 4.7 2.0 1.0
CE1 F:HIS194 4.7 3.4 1.0
CE1 F:PHE371 4.9 4.8 1.0
CE1 F:HIS224 4.9 2.0 1.0

Reference:

A.Volbeda, W.G.Hol. Crystal Structure of Hexameric Haemocyanin From Panulirus Interruptus Refined at 3.2 A Resolution. J.Mol.Biol. V. 209 249 1989.
ISSN: ISSN 0022-2836
PubMed: 2585484
DOI: 10.1016/0022-2836(89)90276-3
Page generated: Wed Oct 28 14:14:50 2020
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