Atomistry » Copper » PDB 1eso-1haw » 1gyc
Atomistry »
  Copper »
    PDB 1eso-1haw »
      1gyc »

Copper in PDB 1gyc: Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions

Enzymatic activity of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions

All present enzymatic activity of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions:
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions, PDB code: 1gyc was solved by T.Choinowski, M.Antorini, K.Piontek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.90 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.681, 84.977, 91.810, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 21.2

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions (pdb code 1gyc). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions, PDB code: 1gyc:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 1gyc

Go back to Copper Binding Sites List in 1gyc
Copper binding site 1 out of 4 in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1500

b:24.4
occ:1.00
 O A:HOH1632 2.1 23.7 1.0
NE2 A:HIS109 2.1 15.0 1.0
ND1 A:HIS66 2.1 15.9 1.0
NE2 A:HIS454 2.2 14.3 1.0
CE1 A:HIS66 2.9 13.8 1.0
CE1 A:HIS109 3.0 14.1 1.0
CE1 A:HIS454 3.0 13.8 1.0
CD2 A:HIS109 3.1 12.1 1.0
CD2 A:HIS454 3.2 13.8 1.0
CG A:HIS66 3.3 15.9 1.0
CB A:HIS66 3.7 14.7 1.0
CD2 A:HIS64 3.7 13.7 1.0
CU A:CU1502 3.8 23.4 1.0
CU A:CU1501 3.9 20.0 1.0
CZ2 A:TRP107 4.0 11.7 1.0
CD2 A:HIS398 4.1 16.2 1.0
NE2 A:HIS66 4.1 15.0 1.0
ND1 A:HIS109 4.2 13.3 1.0
ND1 A:HIS454 4.2 12.2 1.0
NE2 A:HIS398 4.2 16.6 1.0
CG A:HIS109 4.3 14.4 1.0
CG A:HIS454 4.3 14.1 1.0
NE2 A:HIS64 4.3 13.4 1.0
CD2 A:HIS66 4.3 15.2 1.0
CE2 A:TRP107 4.4 13.7 1.0
O A:HOH2051 4.4 31.7 1.0
NE1 A:TRP107 4.5 14.6 1.0
CB A:ALA241 4.6 10.7 1.0
CH2 A:TRP107 4.7 12.1 1.0
CA A:HIS66 4.8 13.6 1.0
CG A:HIS64 4.9 13.2 1.0
CG A:HIS398 5.0 15.7 1.0

Copper binding site 2 out of 4 in 1gyc

Go back to Copper Binding Sites List in 1gyc
Copper binding site 2 out of 4 in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1501

b:20.0
occ:1.00
 NE2 A:HIS400 2.1 11.0 1.0
NE2 A:HIS452 2.2 16.6 1.0
O A:HOH1632 2.2 23.7 1.0
NE2 A:HIS111 2.2 15.5 1.0
CE1 A:HIS400 2.8 11.5 1.0
CE1 A:HIS452 3.0 16.6 1.0
CD2 A:HIS111 3.1 14.5 1.0
CD2 A:HIS400 3.2 11.6 1.0
CD2 A:HIS452 3.3 17.7 1.0
CE1 A:HIS111 3.3 17.0 1.0
CD2 A:HIS398 3.6 16.2 1.0
CU A:CU1502 3.8 23.4 1.0
O A:HOH2051 3.9 31.7 1.0
CU A:CU1500 3.9 24.4 1.0
CD2 A:HIS64 4.0 13.7 1.0
ND1 A:HIS400 4.1 13.1 1.0
NE2 A:HIS398 4.2 16.6 1.0
ND1 A:HIS452 4.2 16.0 1.0
CG A:HIS400 4.2 13.5 1.0
NE2 A:HIS64 4.3 13.4 1.0
CG A:HIS111 4.3 13.4 1.0
CG A:HIS452 4.3 15.8 1.0
ND1 A:HIS111 4.4 13.9 1.0
CE1 A:HIS109 4.5 14.1 1.0
NE2 A:HIS454 4.5 14.3 1.0
CD2 A:HIS454 4.7 13.8 1.0
NE2 A:HIS109 4.7 15.0 1.0
CG A:HIS64 4.8 13.2 1.0
CG A:HIS398 4.8 15.7 1.0
CD2 A:PHE450 4.9 16.6 1.0

Copper binding site 3 out of 4 in 1gyc

Go back to Copper Binding Sites List in 1gyc
Copper binding site 3 out of 4 in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1502

b:23.4
occ:1.00
 NE2 A:HIS398 2.0 16.6 1.0
NE2 A:HIS64 2.0 13.4 1.0
O A:HOH1892 2.4 18.9 1.0
CD2 A:HIS64 2.9 13.7 1.0
CD2 A:HIS398 2.9 16.2 1.0
CE1 A:HIS398 2.9 15.1 1.0
CE1 A:HIS64 3.0 12.4 1.0
NE2 A:HIS400 3.3 11.0 1.0
ND1 A:HIS66 3.4 15.9 1.0
CD2 A:HIS400 3.5 11.6 1.0
CE1 A:HIS400 3.6 11.5 1.0
CG A:HIS66 3.7 15.9 1.0
CE1 A:HIS66 3.8 13.8 1.0
CG A:HIS400 3.8 13.5 1.0
CU A:CU1501 3.8 20.0 1.0
CU A:CU1500 3.8 24.4 1.0
ND1 A:HIS400 3.8 13.1 1.0
CA A:HIS66 4.0 13.6 1.0
ND1 A:HIS398 4.0 17.2 1.0
CG A:HIS398 4.0 15.7 1.0
CG A:HIS64 4.0 13.2 1.0
ND1 A:HIS64 4.1 12.0 1.0
N A:GLY67 4.1 15.6 1.0
O A:HOH1632 4.1 23.7 1.0
CB A:HIS66 4.2 14.7 1.0
CD2 A:HIS66 4.2 15.2 1.0
NE2 A:HIS66 4.3 15.0 1.0
O A:HOH1750 4.5 17.2 1.0
C A:HIS66 4.6 14.2 1.0
CA A:HIS400 4.6 13.4 1.0
O A:HOH1859 4.6 20.7 1.0
CB A:HIS400 4.7 12.7 1.0
N A:HIS66 5.0 13.6 1.0

Copper binding site 4 out of 4 in 1gyc

Go back to Copper Binding Sites List in 1gyc
Copper binding site 4 out of 4 in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1503

b:17.5
occ:1.00
 ND1 A:HIS395 2.0 16.3 1.0
ND1 A:HIS458 2.0 15.3 1.0
SG A:CYS453 2.2 16.0 1.0
CE1 A:HIS395 2.9 18.5 1.0
CE1 A:HIS458 3.0 16.0 1.0
CG A:HIS458 3.1 16.6 1.0
CG A:HIS395 3.1 17.4 1.0
CB A:CYS453 3.3 14.1 1.0
CB A:HIS458 3.4 15.6 1.0
CB A:HIS395 3.5 14.9 1.0
CD2 A:PHE463 3.7 17.2 1.0
CD1 A:ILE455 3.7 14.4 1.0
CE2 A:PHE463 3.9 17.6 1.0
CB A:ILE455 3.9 13.7 1.0
CA A:HIS395 4.0 15.7 1.0
NE2 A:HIS395 4.1 18.2 1.0
NE2 A:HIS458 4.1 16.7 1.0
CG1 A:ILE455 4.1 14.3 1.0
CD2 A:HIS395 4.2 17.9 1.0
CD2 A:HIS458 4.2 17.1 1.0
CA A:CYS453 4.7 13.1 1.0
CD A:PRO396 4.7 14.6 1.0
O A:GLY392 4.7 24.3 1.0
N A:ILE455 4.8 14.9 1.0
CG2 A:ILE455 4.8 13.3 1.0
CG A:PHE463 4.9 17.5 1.0
CA A:HIS458 4.9 16.2 1.0
CA A:ILE455 4.9 13.7 1.0
C A:HIS395 5.0 14.3 1.0
O A:ILE455 5.0 14.3 1.0

Reference:

K.Piontek, M.Antorini, T.Choinowski. Crystal Structure of A Laccase From the Fungus Trametes Versicolor at 1.90-A Resolution Containing A Full Complement of Coppers. J.Biol.Chem. V. 277 37663 2002.
ISSN: ISSN 0021-9258
PubMed: 12163489
DOI: 10.1074/JBC.M204571200
Page generated: Tue Jul 30 21:52:30 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy