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Copper in PDB 1gyc: Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions

Enzymatic activity of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions

All present enzymatic activity of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions:
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions, PDB code: 1gyc was solved by T.Choinowski, M.Antorini, K.Piontek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.90 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.681, 84.977, 91.810, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 21.2

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions (pdb code 1gyc). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions, PDB code: 1gyc:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 1gyc

Go back to Copper Binding Sites List in 1gyc
Copper binding site 1 out of 4 in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1500

b:24.4
occ:1.00
O A:HOH1632 2.1 23.7 1.0
NE2 A:HIS109 2.1 15.0 1.0
ND1 A:HIS66 2.1 15.9 1.0
NE2 A:HIS454 2.2 14.3 1.0
CE1 A:HIS66 2.9 13.8 1.0
CE1 A:HIS109 3.0 14.1 1.0
CE1 A:HIS454 3.0 13.8 1.0
CD2 A:HIS109 3.1 12.1 1.0
CD2 A:HIS454 3.2 13.8 1.0
CG A:HIS66 3.3 15.9 1.0
CB A:HIS66 3.7 14.7 1.0
CD2 A:HIS64 3.7 13.7 1.0
CU A:CU1502 3.8 23.4 1.0
CU A:CU1501 3.9 20.0 1.0
CZ2 A:TRP107 4.0 11.7 1.0
CD2 A:HIS398 4.1 16.2 1.0
NE2 A:HIS66 4.1 15.0 1.0
ND1 A:HIS109 4.2 13.3 1.0
ND1 A:HIS454 4.2 12.2 1.0
NE2 A:HIS398 4.2 16.6 1.0
CG A:HIS109 4.3 14.4 1.0
CG A:HIS454 4.3 14.1 1.0
NE2 A:HIS64 4.3 13.4 1.0
CD2 A:HIS66 4.3 15.2 1.0
CE2 A:TRP107 4.4 13.7 1.0
O A:HOH2051 4.4 31.7 1.0
NE1 A:TRP107 4.5 14.6 1.0
CB A:ALA241 4.6 10.7 1.0
CH2 A:TRP107 4.7 12.1 1.0
CA A:HIS66 4.8 13.6 1.0
CG A:HIS64 4.9 13.2 1.0
CG A:HIS398 5.0 15.7 1.0

Copper binding site 2 out of 4 in 1gyc

Go back to Copper Binding Sites List in 1gyc
Copper binding site 2 out of 4 in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1501

b:20.0
occ:1.00
NE2 A:HIS400 2.1 11.0 1.0
NE2 A:HIS452 2.2 16.6 1.0
O A:HOH1632 2.2 23.7 1.0
NE2 A:HIS111 2.2 15.5 1.0
CE1 A:HIS400 2.8 11.5 1.0
CE1 A:HIS452 3.0 16.6 1.0
CD2 A:HIS111 3.1 14.5 1.0
CD2 A:HIS400 3.2 11.6 1.0
CD2 A:HIS452 3.3 17.7 1.0
CE1 A:HIS111 3.3 17.0 1.0
CD2 A:HIS398 3.6 16.2 1.0
CU A:CU1502 3.8 23.4 1.0
O A:HOH2051 3.9 31.7 1.0
CU A:CU1500 3.9 24.4 1.0
CD2 A:HIS64 4.0 13.7 1.0
ND1 A:HIS400 4.1 13.1 1.0
NE2 A:HIS398 4.2 16.6 1.0
ND1 A:HIS452 4.2 16.0 1.0
CG A:HIS400 4.2 13.5 1.0
NE2 A:HIS64 4.3 13.4 1.0
CG A:HIS111 4.3 13.4 1.0
CG A:HIS452 4.3 15.8 1.0
ND1 A:HIS111 4.4 13.9 1.0
CE1 A:HIS109 4.5 14.1 1.0
NE2 A:HIS454 4.5 14.3 1.0
CD2 A:HIS454 4.7 13.8 1.0
NE2 A:HIS109 4.7 15.0 1.0
CG A:HIS64 4.8 13.2 1.0
CG A:HIS398 4.8 15.7 1.0
CD2 A:PHE450 4.9 16.6 1.0

Copper binding site 3 out of 4 in 1gyc

Go back to Copper Binding Sites List in 1gyc
Copper binding site 3 out of 4 in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1502

b:23.4
occ:1.00
NE2 A:HIS398 2.0 16.6 1.0
NE2 A:HIS64 2.0 13.4 1.0
O A:HOH1892 2.4 18.9 1.0
CD2 A:HIS64 2.9 13.7 1.0
CD2 A:HIS398 2.9 16.2 1.0
CE1 A:HIS398 2.9 15.1 1.0
CE1 A:HIS64 3.0 12.4 1.0
NE2 A:HIS400 3.3 11.0 1.0
ND1 A:HIS66 3.4 15.9 1.0
CD2 A:HIS400 3.5 11.6 1.0
CE1 A:HIS400 3.6 11.5 1.0
CG A:HIS66 3.7 15.9 1.0
CE1 A:HIS66 3.8 13.8 1.0
CG A:HIS400 3.8 13.5 1.0
CU A:CU1501 3.8 20.0 1.0
CU A:CU1500 3.8 24.4 1.0
ND1 A:HIS400 3.8 13.1 1.0
CA A:HIS66 4.0 13.6 1.0
ND1 A:HIS398 4.0 17.2 1.0
CG A:HIS398 4.0 15.7 1.0
CG A:HIS64 4.0 13.2 1.0
ND1 A:HIS64 4.1 12.0 1.0
N A:GLY67 4.1 15.6 1.0
O A:HOH1632 4.1 23.7 1.0
CB A:HIS66 4.2 14.7 1.0
CD2 A:HIS66 4.2 15.2 1.0
NE2 A:HIS66 4.3 15.0 1.0
O A:HOH1750 4.5 17.2 1.0
C A:HIS66 4.6 14.2 1.0
CA A:HIS400 4.6 13.4 1.0
O A:HOH1859 4.6 20.7 1.0
CB A:HIS400 4.7 12.7 1.0
N A:HIS66 5.0 13.6 1.0

Copper binding site 4 out of 4 in 1gyc

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Copper binding site 4 out of 4 in the Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure Determination at Room Temperature of A Laccase From Trametes Versicolor in Its Oxidised Form Containing A Full Complement of Copper Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1503

b:17.5
occ:1.00
ND1 A:HIS395 2.0 16.3 1.0
ND1 A:HIS458 2.0 15.3 1.0
SG A:CYS453 2.2 16.0 1.0
CE1 A:HIS395 2.9 18.5 1.0
CE1 A:HIS458 3.0 16.0 1.0
CG A:HIS458 3.1 16.6 1.0
CG A:HIS395 3.1 17.4 1.0
CB A:CYS453 3.3 14.1 1.0
CB A:HIS458 3.4 15.6 1.0
CB A:HIS395 3.5 14.9 1.0
CD2 A:PHE463 3.7 17.2 1.0
CD1 A:ILE455 3.7 14.4 1.0
CE2 A:PHE463 3.9 17.6 1.0
CB A:ILE455 3.9 13.7 1.0
CA A:HIS395 4.0 15.7 1.0
NE2 A:HIS395 4.1 18.2 1.0
NE2 A:HIS458 4.1 16.7 1.0
CG1 A:ILE455 4.1 14.3 1.0
CD2 A:HIS395 4.2 17.9 1.0
CD2 A:HIS458 4.2 17.1 1.0
CA A:CYS453 4.7 13.1 1.0
CD A:PRO396 4.7 14.6 1.0
O A:GLY392 4.7 24.3 1.0
N A:ILE455 4.8 14.9 1.0
CG2 A:ILE455 4.8 13.3 1.0
CG A:PHE463 4.9 17.5 1.0
CA A:HIS458 4.9 16.2 1.0
CA A:ILE455 4.9 13.7 1.0
C A:HIS395 5.0 14.3 1.0
O A:ILE455 5.0 14.3 1.0

Reference:

K.Piontek, M.Antorini, T.Choinowski. Crystal Structure of A Laccase From the Fungus Trametes Versicolor at 1.90-A Resolution Containing A Full Complement of Coppers. J.Biol.Chem. V. 277 37663 2002.
ISSN: ISSN 0021-9258
PubMed: 12163489
DOI: 10.1074/JBC.M204571200
Page generated: Sun Dec 13 10:59:07 2020

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