Chemical elements
  Copper
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    Cuprous Compounds
    Complex Copper Compounds
    Cupric Compounds
    PDB 1a2v-1bxu
    PDB 1bxv-1fwx
    PDB 1g3d-1j9t
      1g3d
      1g3e
      1gmw
      1gof
      1gog
      1gqg
      1gqh
      1gr7
      1gs6
      1gs7
      1gs8
      1gsk
      1gw0
      1gy1
      1gy2
      1gyc
      1h1i
      1h1m
      1hau
      1haw
      1hc1
      1hcy
      1hfu
      1hl5
      1i53
      1iaa
      1ib5
      1ibb
      1ibd
      1ibf
      1ibg
      1ibh
      1iby
      1ibz
      1ic0
      1id2
      1ils
      1ilu
      1iu7
      1iuz
      1ivu
      1ivv
      1ivw
      1ivx
      1j5c
      1j5d
      1j9q
      1j9r
      1j9s
      1j9t
    PDB 1jcv-1mfm
    PDB 1mg2-1paz
    PDB 1pcs-1sii
    PDB 1sjm-1w6w
    PDB 1w77-2afn
    PDB 2ahk-2dv6
    PDB 2dws-2ggp
    PDB 2ghz-2mta
    PDB 2nrd-2vm3
    PDB 2vm4-2yah
    PDB 2yam-3bkt
    PDB 3bqv-3fyi
    PDB 3g5w-3mie
    PDB 3mif-3t6v
    PDB 3t6w-9pcy

Copper in the structure of Crystal Structure Of M144A Mutant of Alcaligenes Xylosoxidans Nitrite Reductase (pdb 1gs6)






The binding sites of Copper atom in the structure of Crystal Structure Of M144A Mutant of Alcaligenes Xylosoxidans Nitrite Reductase (pdb code 1gs6). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 1gs6 structure was solved by M.J.ELLIS, M.PRUDENCIO, F.E.DODD, R.W.STRANGE, G.SAWERS, R.R.EADY, S.S.HASNAIN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)60.0-2.2
Space groupP63
a (A)106.860
b (A)106.860
c (A)64.026
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)14.8
Rfree (%)18.1


Copper Binding Sites:

Copper binding site 1 out of 2 in 1gs6


Copper binding site 1 out of 2 in 1gs6
Click to enlarge
stereopicture of Copper binding site 1 out of 2 in 1gs6
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 1gs6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: X: Met56, X: Pro88, X: His89, X: Asn90, X: Cys130, X: Pro132, X: His139,

conact list:


AtomAtomDistance (A)
CuSD X:Met564.30
CuO X:Pro884.17
CuC X:Pro884.96
CuNE2 X:His894.20
CuN X:His894.91
CuCB X:His893.47
CuND1 X:His892.12
CuCD2 X:His894.25
CuCE1 X:His893.07
CuCG X:His893.13
CuCA X:His893.93
CuN X:Asn904.89
CuCB X:Cys1303.36
CuSG X:Cys1302.22
CuCA X:Cys1304.73
CuCD X:Pro1324.36
CuCG X:Pro1323.98
CuNE2 X:His1393.97
CuCB X:His1393.48
CuND1 X:His1391.92
CuCD2 X:His1394.10
CuCE1 X:His1392.81
CuCG X:His1393.03
CuCA X:His1394.60

interactive model:


Copper binding site 2 out of 2 in 1gs6


Copper binding site 2 out of 2 in 1gs6
Click to enlarge
stereopicture of Copper binding site 2 out of 2 in 1gs6
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 1gs6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: X: Asp92, X: His94, X: His129, X: Hoh2045, X: Hoh2066,

conact list:


AtomAtomDistance (A)
CuOD2 X:Asp923.68
CuOD1 X:Asp924.59
CuCG X:Asp924.31
CuNE2 X:His942.01
CuND1 X:His944.09
CuCD2 X:His943.06
CuCE1 X:His942.95
CuCG X:His944.18
CuNE2 X:His1292.13
CuND1 X:His1294.24
CuCD2 X:His1293.08
CuCE1 X:His1293.14
CuCG X:His1294.24
CuO X:Hoh20451.94
CuO X:Hoh20662.81

interactive model:




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