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Copper in PDB 1dz0: Reduced Azurin II From Alcaligenes Xylosoxidans

Protein crystallography data

The structure of Reduced Azurin II From Alcaligenes Xylosoxidans, PDB code: 1dz0 was solved by F.E.Dodd, Z.H.L.Abraham, R.R.Eady, S.S.Hasnain, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.5 / 1.75
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 52.650, 52.650, 100.630, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 21.4

Copper Binding Sites:

The binding sites of Copper atom in the Reduced Azurin II From Alcaligenes Xylosoxidans (pdb code 1dz0). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Reduced Azurin II From Alcaligenes Xylosoxidans, PDB code: 1dz0:

Copper binding site 1 out of 1 in 1dz0

Go back to Copper Binding Sites List in 1dz0
Copper binding site 1 out of 1 in the Reduced Azurin II From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Reduced Azurin II From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu130

b:9.5
occ:1.00
ND1 A:HIS117 2.0 12.6 1.0
ND1 A:HIS46 2.0 9.6 1.0
SG A:CYS112 2.2 14.2 1.0
O A:GLY45 2.8 13.9 1.0
CE1 A:HIS46 2.9 9.3 1.0
CE1 A:HIS117 3.0 11.5 1.0
CG A:HIS117 3.0 13.2 1.0
CG A:HIS46 3.1 9.0 1.0
SD A:MET121 3.3 12.8 1.0
CA A:HIS46 3.3 11.7 1.0
CB A:CYS112 3.3 10.7 1.0
CB A:HIS117 3.4 13.1 1.0
CB A:HIS46 3.5 9.8 1.0
C A:GLY45 3.7 12.1 1.0
CE A:MET121 3.9 12.8 1.0
CB A:PHE114 3.9 8.8 1.0
N A:HIS46 4.0 11.4 1.0
NE2 A:HIS117 4.1 10.8 1.0
NE2 A:HIS46 4.1 7.3 1.0
CD2 A:HIS117 4.2 12.1 1.0
CD2 A:HIS46 4.2 8.7 1.0
C A:HIS46 4.5 12.3 1.0
N A:ASN47 4.5 11.3 1.0
CG A:PHE114 4.6 9.9 1.0
CA A:CYS112 4.7 9.6 1.0
CG A:MET121 4.8 14.9 1.0
CD1 A:PHE114 4.9 8.9 1.0
CA A:HIS117 4.9 13.4 1.0
N A:PHE114 4.9 9.4 1.0

Reference:

F.E.Dodd, Z.H.L.Abraham, R.R.Eady, S.S.Hasnain. Structures of Oxidised and Reduced Azurin II From Alcaligenes Xylosoxidans at 1.75 Angstoms Resolution Acta Crystallogr.,Sect.D V. 56 690 2000.
ISSN: ISSN 0907-4449
PubMed: 10818345
DOI: 10.1107/S0907444900003309
Page generated: Wed Sep 2 21:40:32 2020
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