Chemical elements
  Copper
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    Cuprous Compounds
    Complex Copper Compounds
    Cupric Compounds
    PDB 1a2v-1bxu
    PDB 1bxv-1fwx
      1bxv
      1byo
      1byp
      1bzo
      1c9e
      1cb4
      1cbj
      1cc3
      1cob
      1cuo
      1cur
      1cyx
      1d39
      1d40
      1d6u
      1d6y
      1d6z
      1dsw
      1dyu
      1dyz
      1dz0
      1e30
      1e5y
      1e5z
      1e9o
      1e9p
      1e9q
      1ehk
      1ekj
      1eqw
      1eso
      1et5
      1et7
      1et8
      1etj
      1ezl
      1f18
      1f1a
      1f1d
      1f1g
      1f56
      1fa4
      1fd8
      1fee
      1fft
      1fr4
      1fsr
      1fun
      1fvs
      1fwx
    PDB 1g3d-1j9t
    PDB 1jcv-1mfm
    PDB 1mg2-1paz
    PDB 1pcs-1sii
    PDB 1sjm-1w6w
    PDB 1w77-2afn
    PDB 2ahk-2dv6
    PDB 2dws-2ggp
    PDB 2ghz-2mta
    PDB 2nrd-2vm3
    PDB 2vm4-2yah
    PDB 2yam-3bkt
    PDB 3bqv-3fyi
    PDB 3g5w-3mie
    PDB 3mif-3t6v
    PDB 3t6w-9pcy

Copper in the structure of The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies With Mutational Variants. (pdb 1dyu)






The binding sites of Copper atom in the structure of The Active Site Base Controls Cofactor Reactivity in Escherichia Coli Amine Oxidase: X-Ray Crystallographic Studies With Mutational Variants. (pdb code 1dyu). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 1dyu structure was solved by J.M.MURRAY, C.M.WILMOT, C.G.SAYSELL, J.JAEGER, P.F.KNOWLES, S.E.V.PHILLIPS, M.J.MCPHERSON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.0
Space groupP212121
a (A)135.050
b (A)167.170
c (A)79.920
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)18.5
Rfree (%)23.7


Copper Binding Sites:

Copper binding site 1 out of 2 in 1dyu


Copper binding site 1 out of 2 in 1dyu
Click to enlarge
stereopicture of Copper binding site 1 out of 2 in 1dyu
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 1dyu. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His524, A: His526, A: His613, A: His689, A: Met699, A: Hoh2291, A: Hoh2515, A: Hoh2617, A: Hoh2618, A: Hoh2737,

conact list:


AtomAtomDistance (A)
CuNE2 A:His5242.26
CuND1 A:His5244.26
CuCD2 A:His5243.21
CuCE1 A:His5243.17
CuCG A:His5244.31
CuNE2 A:His5262.11
CuND1 A:His5264.23
CuCD2 A:His5262.86
CuCE1 A:His5263.24
CuCG A:His5264.08
CuCE1 A:His6134.90
CuNE2 A:His6894.34
CuCB A:His6893.38
CuND1 A:His6892.23
CuCD2 A:His6894.32
CuCE1 A:His6893.24
CuCG A:His6893.15
CuCA A:His6894.93
CuCE A:Met6994.77
CuSD A:Met6994.91
CuO A:Hoh22914.73
CuO A:Hoh25154.86
CuO A:Hoh26174.75
CuO A:Hoh26182.91
CuO A:Hoh27374.07

interactive model:


Copper binding site 2 out of 2 in 1dyu


Copper binding site 2 out of 2 in 1dyu
Click to enlarge
stereopicture of Copper binding site 2 out of 2 in 1dyu
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 1dyu. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Tpq466, B: His524, B: His526, B: His613, B: His689, B: Met699, B: Hoh2226, B: Hoh2429, B: Hoh2521, B: Hoh2523, B: Hoh2712,

conact list:


AtomAtomDistance (A)
CuO2 B:Tpq4664.94
CuNE2 B:His5242.44
CuND1 B:His5244.47
CuCD2 B:His5243.20
CuCE1 B:His5243.48
CuCG B:His5244.37
CuNE2 B:His5262.10
CuND1 B:His5264.22
CuCD2 B:His5262.91
CuCE1 B:His5263.21
CuCG B:His5264.10
CuNE2 B:His6134.95
CuNE2 B:His6894.25
CuCB B:His6893.36
CuND1 B:His6892.15
CuCD2 B:His6894.25
CuCE1 B:His6893.15
CuCG B:His6893.10
CuCA B:His6894.92
CuCE B:Met6994.91
CuSD B:Met6994.75
CuO B:Hoh22264.88
CuO B:Hoh24294.98
CuO B:Hoh25214.97
CuO B:Hoh25232.91
CuO B:Hoh27123.72

interactive model:




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