Copper in the structure of Crystal Structure Of the Aerobically Freeze Trapped Rate-Determining Catalytic Intermediate of E. Coli Copper-Containing Amine Oxidase. (pdb 1d6z)

The binding sites of Copper atom in the structure of Crystal Structure Of the Aerobically Freeze Trapped Rate-Determining Catalytic Intermediate of E. Coli Copper-Containing Amine Oxidase. (pdb code 1d6z). This binding sites where shown with 5.0 Angstroms radius around Copper atom. The 1d6z structure was solved by C.M.WILMOT, J.HAJDU, M.J.MCPHERSON, P.F.KNOWLES, S.E.V.PHILLIPS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 30.0-2.1 Space group P212121 a (A) 135.236 b (A) 166.482 c (A) 79.628 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.3 Rfree (%) 23.7 Copper Binding Sites: Copper binding site 1 out of 2 in 1d6z Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 1d6z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Tyy466, A: His524, A: His526, A: His613, A: His689, A: Met699, A: Peo2002, A: Hoh2438, A: Hoh2573, conact list: Atom Atom Distance (A) Cu OZ A:Tyy466 4.66 Cu NE2 A:His524 2.16 Cu ND1 A:His524 4.17 Cu CD2 A:His524 3.21 Cu CE1 A:His524 3.02 Cu CG A:His524 4.29 Cu NE2 A:His526 2.03 Cu ND1 A:His526 4.15 Cu CD2 A:His526 2.81 Cu CE1 A:His526 3.16 Cu CG A:His526 4.03 Cu CE1 A:His613 5.00 Cu NE2 A:His689 4.28 Cu CB A:His689 3.44 Cu ND1 A:His689 2.19 Cu CD2 A:His689 4.31 Cu CE1 A:His689 3.17 Cu CG A:His689 3.17 Cu CA A:His689 4.98 Cu CE A:Met699 4.81 Cu SD A:Met699 4.93 Cu O1 A:Peo2002 2.70 Cu O2 A:Peo2002 3.00 Cu O A:Hoh2438 4.69 Cu O A:Hoh2573 3.77 interactive model: Copper binding site 2 out of 2 in 1d6z Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 1d6z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Tyy466, B: Glu490, B: His524, B: His526, B: His689, B: Met699, B: Peo3002, B: Hoh3047, conact list: Atom Atom Distance (A) Cu OZ B:Tyy466 4.79 Cu OE2 B:Glu490 4.75 Cu NE2 B:His524 2.11 Cu ND1 B:His524 4.06 Cu CD2 B:His524 3.16 Cu CE1 B:His524 2.93 Cu CG B:His524 4.20 Cu NE2 B:His526 2.08 Cu ND1 B:His526 4.21 Cu CD2 B:His526 2.85 Cu CE1 B:His526 3.21 Cu CG B:His526 4.07 Cu NE2 B:His689 4.30 Cu CB B:His689 3.38 Cu ND1 B:His689 2.20 Cu CD2 B:His689 4.30 Cu CE1 B:His689 3.20 Cu CG B:His689 3.14 Cu CA B:His689 4.92 Cu SD B:Met699 4.93 Cu O1 B:Peo3002 2.83 Cu O2 B:Peo3002 3.01 Cu O B:Hoh3047 4.77 interactive model: