Atomistry » Copper » PDB 1bex-1eqw » 1d6y
Atomistry »
  Copper »
    PDB 1bex-1eqw »
      1d6y »

Copper in PDB 1d6y: Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide.

Enzymatic activity of Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide.

All present enzymatic activity of Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide.:
1.4.3.6;

Protein crystallography data

The structure of Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide., PDB code: 1d6y was solved by C.M.Wilmot, J.Hajdu, M.J.Mcpherson, P.F.Knowles, S.E.V.Phillips, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 135.236, 166.482, 79.628, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 23.1

Other elements in 1d6y:

The structure of Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide. also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide. (pdb code 1d6y). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide., PDB code: 1d6y:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1d6y

Go back to Copper Binding Sites List in 1d6y
Copper binding site 1 out of 2 in the Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu801

b:43.7
occ:1.00
 NE2 A:HIS526 2.1 37.4 1.0
ND1 A:HIS689 2.1 37.8 1.0
NE2 A:HIS524 2.2 38.0 1.0
N A:NO2002 2.5 60.3 1.0
CD2 A:HIS526 2.8 36.1 1.0
CE1 A:HIS524 3.0 35.1 1.0
CG A:HIS689 3.1 37.1 1.0
CE1 A:HIS689 3.1 37.5 1.0
O A:NO2002 3.2 60.4 1.0
CD2 A:HIS524 3.3 34.5 1.0
CE1 A:HIS526 3.3 35.3 1.0
CB A:HIS689 3.4 35.0 1.0
CG A:HIS526 4.0 36.2 1.0
O A:HOH2573 4.1 53.5 1.0
ND1 A:HIS524 4.1 35.3 1.0
ND1 A:HIS526 4.2 36.7 1.0
NE2 A:HIS689 4.2 36.7 1.0
CD2 A:HIS689 4.3 35.9 1.0
CG A:HIS524 4.3 35.6 1.0
O A:HOH2435 4.8 49.1 1.0
SD A:MET699 4.8 45.1 1.0
CE A:MET699 4.9 45.2 1.0
CA A:HIS689 4.9 34.2 1.0
CE1 A:HIS613 5.0 39.4 1.0

Copper binding site 2 out of 2 in 1d6y

Go back to Copper Binding Sites List in 1d6y
Copper binding site 2 out of 2 in the Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of E. Coli Copper-Containing Amine Oxidase Anaerobically Reduced with Beta-Phenylethylamine and Complexed with Nitric Oxide. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu801

b:40.7
occ:1.00
 NE2 B:HIS526 2.1 39.4 1.0
ND1 B:HIS689 2.1 31.6 1.0
NE2 B:HIS524 2.2 36.8 1.0
N B:NO3002 2.3 49.7 1.0
O B:NO3002 3.0 48.1 1.0
CE1 B:HIS524 3.0 36.5 1.0
CD2 B:HIS526 3.0 35.9 1.0
CE1 B:HIS689 3.1 32.5 1.0
CG B:HIS689 3.1 33.7 1.0
CE1 B:HIS526 3.2 38.5 1.0
CD2 B:HIS524 3.2 36.9 1.0
CB B:HIS689 3.5 33.7 1.0
ND1 B:HIS524 4.1 37.8 1.0
CG B:HIS526 4.2 35.7 1.0
NE2 B:HIS689 4.2 34.6 1.0
ND1 B:HIS526 4.2 37.9 1.0
CG B:HIS524 4.3 36.8 1.0
CD2 B:HIS689 4.3 32.5 1.0
OE2 B:GLU490 4.6 59.1 1.0
O B:HOH3043 4.7 42.6 1.0
SD B:MET699 4.8 49.4 1.0
CA B:HIS689 5.0 33.5 1.0
CE B:MET699 5.0 47.0 1.0

Reference:

C.M.Wilmot, J.Hajdu, M.J.Mcpherson, P.F.Knowles, S.E.Phillips. Visualization of Dioxygen Bound to Copper During Enzyme Catalysis. Science V. 286 1724 1999.
ISSN: ISSN 0036-8075
PubMed: 10576737
DOI: 10.1126/SCIENCE.286.5445.1724
Page generated: Tue Jul 30 21:42:47 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy