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Copper in PDB 1cob: Crystal Structure Solution and Refinement of the Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase at 2.0 Angstroms Resolution

Enzymatic activity of Crystal Structure Solution and Refinement of the Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase at 2.0 Angstroms Resolution

All present enzymatic activity of Crystal Structure Solution and Refinement of the Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase at 2.0 Angstroms Resolution:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure Solution and Refinement of the Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase at 2.0 Angstroms Resolution, PDB code: 1cob was solved by K.Djinovic, A.Coda, L.Antolini, G.Pelosi, A.Desideri, M.Falconi, G.Rotilio, M.Bolognesi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.990, 147.630, 47.530, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure Solution and Refinement of the Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase at 2.0 Angstroms Resolution (pdb code 1cob). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure Solution and Refinement of the Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase at 2.0 Angstroms Resolution, PDB code: 1cob:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1cob

Go back to Copper Binding Sites List in 1cob
Copper binding site 1 out of 2 in the Crystal Structure Solution and Refinement of the Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase at 2.0 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure Solution and Refinement of the Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase at 2.0 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu152

b:27.8
occ:1.00
ND1 A:HIS44 2.1 20.1 1.0
NE2 A:HIS118 2.1 23.0 1.0
NE2 A:HIS61 2.2 29.7 1.0
NE2 A:HIS46 2.3 11.0 1.0
CD2 A:HIS61 2.8 22.3 1.0
O A:HOH237 2.9 49.7 1.0
CE1 A:HIS118 2.9 4.4 1.0
CG A:HIS44 3.0 17.7 1.0
CD2 A:HIS118 3.2 13.3 1.0
CE1 A:HIS44 3.2 15.1 1.0
CE1 A:HIS61 3.2 19.6 1.0
CB A:HIS44 3.2 10.9 1.0
CE1 A:HIS46 3.3 13.2 1.0
CD2 A:HIS46 3.3 13.9 1.0
CG A:HIS61 3.9 33.0 1.0
ND1 A:HIS118 4.0 25.4 1.0
ND1 A:HIS61 4.1 18.6 1.0
CG A:HIS118 4.1 18.2 1.0
CD2 A:HIS44 4.2 9.2 1.0
NE2 A:HIS44 4.2 19.1 1.0
ND1 A:HIS46 4.4 16.1 1.0
CG A:HIS46 4.4 11.6 1.0
CA A:HIS44 4.5 21.1 1.0
N A:HIS44 4.7 11.6 1.0
CG1 A:VAL116 4.8 13.1 1.0
CB A:VAL116 4.8 14.6 1.0
O A:HOH213 5.0 23.1 0.9

Copper binding site 2 out of 2 in 1cob

Go back to Copper Binding Sites List in 1cob
Copper binding site 2 out of 2 in the Crystal Structure Solution and Refinement of the Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase at 2.0 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure Solution and Refinement of the Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase at 2.0 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu152

b:18.4
occ:1.00
NE2 B:HIS61 2.0 16.9 1.0
ND1 B:HIS44 2.0 19.5 1.0
NE2 B:HIS118 2.1 11.2 1.0
NE2 B:HIS46 2.2 7.7 1.0
O B:HOH154 2.4 23.5 1.0
CD2 B:HIS61 2.8 37.4 1.0
CE1 B:HIS46 2.9 16.4 1.0
CG B:HIS44 3.0 43.1 1.0
CE1 B:HIS44 3.1 22.9 1.0
CE1 B:HIS118 3.1 6.5 1.0
CE1 B:HIS61 3.1 29.7 1.0
CD2 B:HIS118 3.1 23.6 1.0
CD2 B:HIS46 3.3 12.1 1.0
CB B:HIS44 3.3 9.6 1.0
CG B:HIS61 4.0 19.0 1.0
ND1 B:HIS46 4.1 19.6 1.0
ND1 B:HIS61 4.1 12.3 1.0
NE2 B:HIS44 4.2 37.1 1.0
ND1 B:HIS118 4.2 16.7 1.0
CD2 B:HIS44 4.2 35.8 1.0
CG B:HIS118 4.2 9.3 1.0
CG B:HIS46 4.3 16.8 1.0
O B:HOH203 4.5 26.9 0.9
CA B:HIS44 4.6 1.3 1.0
O B:HOH221 4.8 26.3 0.9
N B:HIS44 4.8 9.6 1.0
CB B:VAL116 5.0 11.9 1.0

Reference:

K.Djinovic, A.Coda, L.Antolini, G.Pelosi, A.Desideri, M.Falconi, G.Rotilio, M.Bolognesi. Crystal Structure Solution and Refinement of the Semisynthetic Cobalt-Substituted Bovine Erythrocyte Superoxide Dismutase at 2.0 A Resolution. J.Mol.Biol. V. 226 227 1992.
ISSN: ISSN 0022-2836
PubMed: 1619651
DOI: 10.1016/0022-2836(92)90135-7
Page generated: Wed Sep 2 21:39:13 2020
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