Atomistry » Copper » PDB 1bex-1eqw » 1cc3
Atomistry »
  Copper »
    PDB 1bex-1eqw »
      1cc3 »

Copper in PDB 1cc3: Purple Cua Center

Protein crystallography data

The structure of Purple Cua Center, PDB code: 1cc3 was solved by H.Robinson, M.C.Ang, Y.-G.Gao, M.T.Hay, Y.Lu, A.H.-J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 35.630, 62.332, 51.230, 90.00, 99.50, 90.00
R / Rfree (%) 20 / 26.3

Copper Binding Sites:

The binding sites of Copper atom in the Purple Cua Center (pdb code 1cc3). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Purple Cua Center, PDB code: 1cc3:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 1cc3

Go back to Copper Binding Sites List in 1cc3
Copper binding site 1 out of 4 in the Purple Cua Center


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Purple Cua Center within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu131

b:10.7
occ:1.00
ND1 A:HIS120 2.1 7.3 1.0
O A:GLU114 2.2 9.7 1.0
SG A:CYS116 2.3 9.7 1.0
CU A:CU132 2.4 7.6 1.0
SG A:CYS112 2.5 7.3 1.0
CE1 A:HIS120 2.8 5.3 1.0
C A:GLU114 3.1 0.0 1.0
CG A:HIS120 3.2 9.8 1.0
CB A:CYS116 3.4 9.9 1.0
CB A:CYS112 3.6 11.8 1.0
N A:CYS116 3.6 6.0 1.0
CB A:HIS120 3.7 18.0 1.0
N A:GLU114 3.8 8.6 1.0
CA A:GLU114 4.0 6.7 1.0
CA A:HIS120 4.0 7.2 1.0
NE2 A:HIS120 4.0 14.2 1.0
O A:CYS112 4.0 6.1 1.0
O A:HIS120 4.1 3.5 1.0
CA A:CYS116 4.1 8.1 1.0
N A:LEU115 4.1 8.6 1.0
C A:LEU115 4.1 7.6 1.0
CD2 A:HIS120 4.2 7.4 1.0
CA A:LEU115 4.2 9.8 1.0
O A:GLY45 4.2 8.7 1.0
SD A:MET123 4.3 9.6 1.0
C A:CYS112 4.3 2.5 1.0
ND1 A:HIS46 4.4 2.7 1.0
CB A:GLU114 4.5 2.2 1.0
C A:HIS120 4.5 9.7 1.0
CA A:CYS112 4.6 5.1 1.0
C A:SER113 4.7 12.3 1.0
O A:LEU115 5.0 11.7 1.0
C A:CYS116 5.0 18.7 1.0

Copper binding site 2 out of 4 in 1cc3

Go back to Copper Binding Sites List in 1cc3
Copper binding site 2 out of 4 in the Purple Cua Center


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Purple Cua Center within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu132

b:7.6
occ:1.00
ND1 A:HIS46 2.0 2.7 1.0
SG A:CYS116 2.3 9.7 1.0
SG A:CYS112 2.4 7.3 1.0
CU A:CU131 2.4 10.7 1.0
CE1 A:HIS46 2.9 6.7 1.0
SD A:MET123 3.0 9.6 1.0
CG A:HIS46 3.1 0.1 1.0
O A:GLY45 3.1 8.7 1.0
CB A:CYS116 3.2 9.9 1.0
CB A:CYS112 3.4 11.8 1.0
CB A:HIS46 3.5 10.8 1.0
O A:GLU114 3.6 9.7 1.0
CA A:HIS46 3.7 5.6 1.0
CE A:MET123 3.9 7.7 1.0
C A:GLY45 4.0 23.2 1.0
NE2 A:HIS46 4.1 4.4 1.0
CD2 A:HIS46 4.1 8.0 1.0
N A:HIS46 4.2 10.6 1.0
ND1 A:HIS120 4.4 7.3 1.0
CG A:MET123 4.5 1.0 1.0
CA A:CYS116 4.6 8.1 1.0
C A:GLU114 4.7 0.0 1.0
CB A:MET123 4.8 0.0 1.0
CA A:CYS112 4.8 5.1 1.0
N A:CYS116 4.9 6.0 1.0
CB A:GLU114 5.0 2.2 1.0
C A:HIS46 5.0 3.7 1.0

Copper binding site 3 out of 4 in 1cc3

Go back to Copper Binding Sites List in 1cc3
Copper binding site 3 out of 4 in the Purple Cua Center


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Purple Cua Center within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu631

b:11.3
occ:1.00
O B:GLU614 2.2 7.9 1.0
ND1 B:HIS620 2.3 9.6 1.0
SG B:CYS616 2.3 8.6 1.0
CU B:CU632 2.3 10.7 1.0
SG B:CYS612 2.4 9.1 1.0
CE1 B:HIS620 3.2 1.1 1.0
CG B:HIS620 3.3 2.3 1.0
CB B:CYS612 3.4 15.6 1.0
C B:GLU614 3.4 2.7 1.0
CB B:CYS616 3.4 0.6 1.0
N B:CYS616 3.6 10.4 1.0
CB B:HIS620 3.7 0.1 1.0
N B:GLU614 4.0 15.6 1.0
C B:LEU615 4.1 4.0 1.0
CA B:HIS620 4.1 9.1 1.0
O B:CYS612 4.1 8.2 1.0
CA B:CYS616 4.1 11.4 1.0
CA B:GLU614 4.2 6.8 1.0
SD B:MET623 4.2 9.3 1.0
CA B:LEU615 4.3 2.1 1.0
C B:CYS612 4.3 8.9 1.0
N B:LEU615 4.3 8.9 1.0
NE2 B:HIS620 4.3 13.6 1.0
O B:GLY545 4.4 7.0 1.0
ND1 B:HIS546 4.4 7.0 1.0
CD2 B:HIS620 4.4 24.1 1.0
O B:HIS620 4.4 11.8 1.0
CA B:CYS612 4.5 13.1 1.0
CB B:GLU614 4.5 5.7 1.0
C B:HIS620 4.6 11.8 1.0
C B:SER613 4.6 4.0 1.0
CG B:MET623 4.7 4.2 1.0
O B:LEU615 4.8 12.5 1.0
O B:HOH1006 4.9 8.7 1.0
N B:SER613 4.9 6.4 1.0
CB B:MET623 4.9 9.5 1.0

Copper binding site 4 out of 4 in 1cc3

Go back to Copper Binding Sites List in 1cc3
Copper binding site 4 out of 4 in the Purple Cua Center


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Purple Cua Center within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu632

b:10.7
occ:1.00
ND1 B:HIS546 2.1 7.0 1.0
SG B:CYS612 2.3 9.1 1.0
CU B:CU631 2.3 11.3 1.0
SG B:CYS616 2.4 8.6 1.0
CG B:HIS546 3.0 3.4 1.0
O B:GLY545 3.0 7.0 1.0
CE1 B:HIS546 3.1 0.0 1.0
SD B:MET623 3.2 9.3 1.0
CB B:HIS546 3.3 12.4 1.0
CB B:CYS616 3.3 0.6 1.0
CB B:CYS612 3.4 15.6 1.0
CA B:HIS546 3.5 10.4 1.0
O B:GLU614 3.7 7.9 1.0
CE B:MET623 3.7 6.6 1.0
C B:GLY545 4.0 7.9 1.0
CD2 B:HIS546 4.1 14.0 1.0
N B:HIS546 4.1 8.1 1.0
NE2 B:HIS546 4.2 9.5 1.0
CG B:MET623 4.5 4.2 1.0
ND1 B:HIS620 4.6 9.6 1.0
CA B:CYS616 4.7 11.4 1.0
C B:HIS546 4.7 9.5 1.0
C B:GLU614 4.8 2.7 1.0
CB B:GLU614 4.8 5.7 1.0
CA B:CYS612 4.8 13.1 1.0
N B:ASN547 4.9 7.6 1.0
N B:CYS616 4.9 10.4 1.0
CB B:MET623 4.9 9.5 1.0

Reference:

H.Robinson, M.C.Ang, Y.G.Gao, M.T.Hay, Y.Lu, A.H.Wang. Structural Basis of Electron Transfer Modulation in the Purple Cua Center. Biochemistry V. 38 5677 1999.
ISSN: ISSN 0006-2960
PubMed: 10231517
DOI: 10.1021/BI9901634
Page generated: Sun Dec 13 10:58:17 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy