Atomistry » Copper » PDB 1bex-1eqw » 1byo
Atomistry »
  Copper »
    PDB 1bex-1eqw »
      1byo »

Copper in PDB 1byo: Wild-Type Plastocyanin From Silene

Protein crystallography data

The structure of Wild-Type Plastocyanin From Silene, PDB code: 1byo was solved by H.Sugawara, T.Inoue, C.Li, M.Gotowda, T.Hibino, T.Takabe, Y.Kai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 76.600, 76.600, 65.500, 90.00, 90.00, 120.00
R / Rfree (%) 19.7 / 22.5

Copper Binding Sites:

The binding sites of Copper atom in the Wild-Type Plastocyanin From Silene (pdb code 1byo). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Wild-Type Plastocyanin From Silene, PDB code: 1byo:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1byo

Go back to Copper Binding Sites List in 1byo
Copper binding site 1 out of 2 in the Wild-Type Plastocyanin From Silene


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Wild-Type Plastocyanin From Silene within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu100

b:25.5
occ:1.00
ND1 A:HIS37 2.0 23.5 1.0
ND1 A:HIS87 2.1 21.5 1.0
SG A:CYS84 2.2 17.7 1.0
SD A:MET92 2.7 18.6 1.0
CE1 A:HIS37 2.9 23.5 1.0
CE1 A:HIS87 3.0 19.8 1.0
CG A:HIS87 3.0 20.3 1.0
CG A:HIS37 3.1 23.8 1.0
CB A:CYS84 3.4 18.6 1.0
O A:PRO36 3.4 21.7 1.0
CB A:HIS87 3.4 21.6 1.0
CB A:HIS37 3.5 20.1 1.0
CE A:MET92 3.5 17.7 1.0
CA A:HIS37 3.6 20.5 1.0
NE2 A:HIS37 4.1 23.0 1.0
NE2 A:HIS87 4.1 20.2 1.0
CG A:MET92 4.1 17.4 1.0
CD2 A:HIS87 4.2 19.9 1.0
CD2 A:HIS37 4.2 22.6 1.0
C A:PRO36 4.3 22.6 1.0
N A:HIS37 4.4 21.0 1.0
N A:HIS87 4.4 21.9 1.0
CA A:HIS87 4.6 22.4 1.0
CB A:MET92 4.6 21.9 1.0
N A:ASN38 4.7 18.6 1.0
C A:HIS37 4.7 21.1 1.0
CA A:CYS84 4.7 21.1 1.0
CB A:PRO86 4.9 21.7 1.0
O A:GLY34 5.0 22.8 1.0

Copper binding site 2 out of 2 in 1byo

Go back to Copper Binding Sites List in 1byo
Copper binding site 2 out of 2 in the Wild-Type Plastocyanin From Silene


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Wild-Type Plastocyanin From Silene within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu100

b:25.6
occ:1.00
ND1 B:HIS37 1.9 22.2 1.0
SG B:CYS84 2.1 16.4 1.0
ND1 B:HIS87 2.3 20.1 1.0
SD B:MET92 2.8 19.3 1.0
CE1 B:HIS37 2.9 23.7 1.0
CG B:HIS37 2.9 23.1 1.0
CG B:HIS87 3.2 20.3 1.0
CB B:CYS84 3.3 15.1 1.0
CE1 B:HIS87 3.3 21.5 1.0
CB B:HIS37 3.4 22.6 1.0
CB B:HIS87 3.5 18.6 1.0
O B:PRO36 3.6 22.3 1.0
CA B:HIS37 3.6 24.8 1.0
CE B:MET92 3.6 21.9 1.0
NE2 B:HIS37 4.0 23.1 1.0
CD2 B:HIS37 4.1 23.4 1.0
CG B:MET92 4.2 20.1 1.0
C B:PRO36 4.4 25.7 1.0
CD2 B:HIS87 4.4 20.4 1.0
NE2 B:HIS87 4.4 21.4 1.0
N B:HIS37 4.4 25.7 1.0
N B:HIS87 4.5 20.8 1.0
CG B:PRO86 4.5 21.4 1.0
N B:ASN38 4.6 22.5 1.0
CB B:MET92 4.6 19.6 1.0
CA B:HIS87 4.6 21.2 1.0
CA B:CYS84 4.7 18.5 1.0
C B:HIS37 4.7 23.9 1.0
C B:CYS84 5.0 19.7 1.0
O B:GLY34 5.0 20.5 1.0
O B:CYS84 5.0 23.4 1.0

Reference:

H.Sugawara, T.Inoue, C.Li, M.Gotowda, T.Hibino, T.Takabe, Y.Kai. Crystal Structures of Wild-Type and Mutant Plastocyanins From A Higher Plant, Silene. J.Biochem.(Tokyo) V. 125 899 1999.
ISSN: ISSN 0021-924X
PubMed: 10220581
Page generated: Sun Dec 13 10:58:13 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy