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Copper in PDB 1azr: Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution

Protein crystallography data

The structure of Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution, PDB code: 1azr was solved by L.Sjolin, Lc.Tsai, V.Langer, T.Pascher, G.Karlsson, M.Nordling, H.Nar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.810, 81.530, 112.610, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / n/a

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution (pdb code 1azr). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution, PDB code: 1azr:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 1azr

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Copper binding site 1 out of 4 in the Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu129

b:11.8
occ:1.00
ND1 A:HIS46 2.0 7.3 1.0
ND1 A:HIS117 2.1 10.6 1.0
O A:GLY45 2.3 7.7 1.0
SG A:CYS112 2.3 7.5 1.0
CE1 A:HIS46 2.9 6.6 1.0
CE1 A:HIS117 3.1 6.6 1.0
CG A:HIS117 3.1 9.8 1.0
CG A:HIS46 3.1 7.1 1.0
C A:GLY45 3.4 8.5 1.0
SD A:MET121 3.4 11.2 1.0
CA A:HIS46 3.4 8.8 1.0
CB A:HIS117 3.5 9.6 1.0
CB A:CYS112 3.6 5.5 1.0
CB A:HIS46 3.6 3.5 1.0
CB A:PHE114 3.7 4.2 1.0
N A:HIS46 3.8 11.3 1.0
NE2 A:HIS46 4.1 7.0 1.0
NE2 A:HIS117 4.2 5.7 1.0
CD2 A:HIS46 4.2 9.0 1.0
CD2 A:HIS117 4.3 8.2 1.0
CG A:PHE114 4.3 4.5 1.0
CE A:MET121 4.4 7.8 1.0
CA A:GLY45 4.7 8.0 1.0
C A:HIS46 4.7 9.1 1.0
O A:MET44 4.8 4.3 1.0
CD1 A:PHE114 4.8 2.0 1.0
N A:ASP47 4.9 9.0 1.0
CG A:MET121 4.9 9.2 1.0
CA A:CYS112 4.9 4.1 1.0
N A:GLY45 5.0 5.2 1.0
CA A:PHE114 5.0 6.2 1.0
CA A:HIS117 5.0 12.5 1.0

Copper binding site 2 out of 4 in 1azr

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Copper binding site 2 out of 4 in the Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu129

b:6.8
occ:1.00
ND1 B:HIS117 1.9 6.1 1.0
ND1 B:HIS46 2.1 9.6 1.0
SG B:CYS112 2.2 4.8 1.0
O B:GLY45 2.4 6.8 1.0
CE1 B:HIS117 2.8 6.6 1.0
CG B:HIS117 2.9 5.7 1.0
CE1 B:HIS46 3.0 8.4 1.0
CG B:HIS46 3.2 11.4 1.0
CB B:HIS117 3.4 4.6 1.0
C B:GLY45 3.4 7.1 1.0
CA B:HIS46 3.4 7.5 1.0
SD B:MET121 3.4 6.7 1.0
CB B:CYS112 3.4 3.1 1.0
CB B:HIS46 3.6 8.1 1.0
CB B:PHE114 3.8 7.0 1.0
N B:HIS46 3.9 6.7 1.0
NE2 B:HIS117 4.0 7.7 1.0
CD2 B:HIS117 4.1 3.3 1.0
NE2 B:HIS46 4.1 7.7 1.0
CE B:MET121 4.2 7.5 1.0
CD2 B:HIS46 4.3 7.5 1.0
CG B:PHE114 4.6 2.0 1.0
C B:HIS46 4.7 7.1 1.0
CA B:GLY45 4.7 7.3 1.0
N B:ASP47 4.7 5.2 1.0
CA B:CYS112 4.8 4.3 1.0
N B:GLY45 4.9 8.1 1.0
N B:PHE114 4.9 7.1 1.0
CA B:HIS117 4.9 5.2 1.0
CG B:MET121 4.9 5.3 1.0
CA B:PHE114 5.0 9.2 1.0

Copper binding site 3 out of 4 in 1azr

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Copper binding site 3 out of 4 in the Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu129

b:10.9
occ:1.00
ND1 C:HIS117 2.0 10.1 1.0
ND1 C:HIS46 2.1 5.9 1.0
SG C:CYS112 2.2 3.4 1.0
O C:GLY45 2.3 8.2 1.0
CE1 C:HIS117 3.0 10.5 1.0
CG C:HIS117 3.0 12.7 1.0
CE1 C:HIS46 3.1 5.5 1.0
CG C:HIS46 3.2 6.1 1.0
CA C:HIS46 3.2 5.0 1.0
C C:GLY45 3.3 8.1 1.0
CB C:HIS117 3.5 11.9 1.0
CB C:CYS112 3.5 2.6 1.0
SD C:MET121 3.5 6.0 1.0
CB C:HIS46 3.5 3.7 1.0
N C:HIS46 3.7 7.0 1.0
CB C:PHE114 3.8 4.5 1.0
NE2 C:HIS117 4.1 11.2 1.0
NE2 C:HIS46 4.2 2.6 1.0
CE C:MET121 4.2 8.4 1.0
CD2 C:HIS117 4.2 12.0 1.0
CD2 C:HIS46 4.3 4.3 1.0
C C:HIS46 4.5 4.4 1.0
N C:ASP47 4.6 4.6 1.0
CG C:PHE114 4.6 3.2 1.0
CA C:GLY45 4.7 8.4 1.0
N C:PHE114 4.9 3.0 1.0
CA C:CYS112 4.9 3.6 1.0
N C:GLY45 4.9 8.1 1.0
O C:MET44 4.9 9.2 1.0
CA C:PHE114 5.0 5.0 1.0
CA C:HIS117 5.0 9.9 1.0

Copper binding site 4 out of 4 in 1azr

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Copper binding site 4 out of 4 in the Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Pseudomonas Aeruginosa Zinc Azurin Mutant ASP47ASP at 2.4 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu129

b:13.5
occ:1.00
ND1 D:HIS46 2.1 9.2 1.0
ND1 D:HIS117 2.2 11.5 1.0
SG D:CYS112 2.3 11.0 1.0
O D:GLY45 2.4 9.0 1.0
CE1 D:HIS46 3.0 10.7 1.0
CE1 D:HIS117 3.1 10.5 1.0
CG D:HIS46 3.2 8.6 1.0
CG D:HIS117 3.3 11.1 1.0
CA D:HIS46 3.3 8.4 1.0
SD D:MET121 3.4 10.2 1.0
C D:GLY45 3.4 9.0 1.0
CB D:CYS112 3.5 10.4 1.0
CB D:HIS46 3.6 5.1 1.0
CB D:PHE114 3.7 2.1 1.0
CB D:HIS117 3.7 9.0 1.0
N D:HIS46 3.8 9.2 1.0
NE2 D:HIS46 4.2 5.7 1.0
CE D:MET121 4.2 6.0 1.0
NE2 D:HIS117 4.3 10.1 1.0
CD2 D:HIS46 4.3 8.0 1.0
CD2 D:HIS117 4.4 11.7 1.0
CG D:PHE114 4.4 3.7 1.0
C D:HIS46 4.6 8.3 1.0
N D:ASP47 4.6 7.7 1.0
CA D:GLY45 4.8 8.3 1.0
O D:MET44 4.8 9.3 1.0
CA D:PHE114 4.9 5.2 1.0
N D:PHE114 4.9 6.8 1.0
CD1 D:PHE114 4.9 2.0 1.0
CA D:CYS112 4.9 8.0 1.0
CG D:MET121 4.9 10.5 1.0

Reference:

L.Sjolin, L.C.Tsai, V.Langer, T.Pascher, G.Karlsson, M.Nordling, H.Nar. Structure of Pseudomonas Aeruginosai Zinc Azurin Mutant ASN47ASP at 2.4 A Resolution. Acta Crystallogr.,Sect.D V. 49 449 1993.
ISSN: ISSN 0907-4449
PubMed: 15299504
DOI: 10.1107/S0907444993005207
Page generated: Wed Sep 2 21:36:38 2020
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