Copper in PDB 1azc: Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution

The structure of Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution, PDB code: 1azc was solved by E.N.Baker, W.E.B.Shepard, R.L.Kingston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	75.100, 74.100, 99.500, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Copper atom in the Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution (pdb code 1azc). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution, PDB code: 1azc:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu130 b:7.4 occ:0.13 ND1 A:HIS117 1.9 15.4 1.0 ND1 A:HIS46 2.0 14.9 1.0 SG A:CYS112 2.2 16.3 1.0 O A:GLY45 2.8 16.2 1.0 CE1 A:HIS117 2.8 11.3 1.0 CG A:HIS117 2.9 17.0 1.0 CE1 A:HIS46 3.0 11.6 1.0 CG A:HIS46 3.1 12.6 1.0 CA A:HIS46 3.3 11.7 1.0 CB A:HIS117 3.3 15.1 1.0 SD A:MET121 3.4 17.8 1.0 CB A:CYS112 3.4 11.3 1.0 CB A:HIS46 3.5 8.2 1.0 C A:GLY45 3.7 14.1 1.0 CB A:PHE114 3.8 14.2 1.0 NE2 A:HIS117 4.0 15.0 1.0 N A:HIS46 4.0 11.0 1.0 CE A:MET121 4.0 17.6 1.0 CD2 A:HIS117 4.0 16.6 1.0 NE2 A:HIS46 4.1 12.2 1.0 CD2 A:HIS46 4.2 14.1 1.0 C A:HIS46 4.5 13.7 1.0 N A:ASN47 4.5 12.5 1.0 CG A:PHE114 4.5 18.1 1.0 CA A:CYS112 4.7 7.3 1.0 N A:PHE114 4.8 14.8 1.0 CD1 A:PHE114 4.9 17.9 1.0 CA A:HIS117 4.9 11.4 1.0 CA A:PHE114 4.9 13.3 1.0

Copper binding site 2 out of 2 in the Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu130 b:7.6 occ:0.15 ND1 B:HIS117 1.8 18.1 1.0 ND1 B:HIS46 1.8 17.2 1.0 SG B:CYS112 2.3 13.7 1.0 O B:GLY45 2.7 15.4 1.0 CE1 B:HIS117 2.7 21.2 1.0 CE1 B:HIS46 2.8 14.7 1.0 CG B:HIS117 2.9 17.1 1.0 CG B:HIS46 2.9 12.8 1.0 CA B:HIS46 3.2 13.2 1.0 CB B:HIS46 3.4 7.8 1.0 CB B:HIS117 3.4 10.7 1.0 CB B:CYS112 3.5 10.9 1.0 SD B:MET121 3.5 18.8 1.0 C B:GLY45 3.6 16.7 1.0 CB B:PHE114 3.7 13.1 1.0 NE2 B:HIS117 3.8 20.6 1.0 N B:HIS46 3.9 12.5 1.0 NE2 B:HIS46 3.9 15.1 1.0 CD2 B:HIS117 4.0 19.2 1.0 CD2 B:HIS46 4.0 11.6 1.0 CE B:MET121 4.4 16.3 1.0 C B:HIS46 4.4 20.9 1.0 CG B:PHE114 4.5 20.7 1.0 N B:ASN47 4.5 12.0 1.0 CA B:CYS112 4.8 13.0 1.0 N B:PHE114 4.9 18.8 1.0 CA B:PHE114 4.9 10.6 1.0 CD1 B:PHE114 4.9 14.1 1.0 CA B:HIS117 5.0 7.8 1.0

W.E.Shepard, R.L.Kingston, B.F.Anderson, E.N.Baker. Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 A Resolution. Acta Crystallogr.,Sect.D V. 49 331 1993.
ISSN: ISSN 0907-4449
PubMed: 15299522
DOI: 10.1107/S0907444992013544