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    PDB 1a2v-1bxu
      1a2v
      1a3z
      1a4a
      1a4b
      1a4c
      1a65
      1a8v
      1a8z
      1aac
      1aan
      1adw
      1ag0
      1ag6
      1and
      1aoz
      1aq8
      1aqp
      1aqr
      1aqs
      1ar1
      1arm
      1as6
      1as7
      1as8
      1aso
      1asp
      1asq
      1av4
      1avl
      1azb
      1azc
      1azn
      1azr
      1azu
      1azv
      1b3i
      1b4l
      1b4t
      1ba9
      1baw
      1bex
      1bq5
      1bqk
      1bqr
      1bt1
      1bt2
      1bt3
      1bug
      1bxa
      1bxu
    PDB 1bxv-1fwx
    PDB 1g3d-1j9t
    PDB 1jcv-1mfm
    PDB 1mg2-1paz
    PDB 1pcs-1sii
    PDB 1sjm-1w6w
    PDB 1w77-2afn
    PDB 2ahk-2dv6
    PDB 2dws-2ggp
    PDB 2ghz-2mta
    PDB 2nrd-2vm3
    PDB 2vm4-2yah
    PDB 2yam-3bkt
    PDB 3bqv-3fyi
    PDB 3g5w-3mie
    PDB 3mif-3t6v
    PDB 3t6w-9pcy

Copper in the structure of X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, and Azide-Forms (pdb 1asp)






The binding sites of Copper atom in the structure of X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, and Azide-Forms (pdb code 1asp). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 1asp structure was solved by A.MESSERSCHMIDT, H.LUECKE, R.HUBER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)2.6
Space groupP21212
a (A)106.330
b (A)105.320
c (A)112.840
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)16
Rfree (%)n/a


Copper Binding Sites:

Copper binding site 1 out of 9 in 1asp


Copper binding site 1 out of 9 in 1asp
Click to enlarge
stereopicture of Copper binding site 1 out of 9 in 1asp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 1asp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Thr444, A: His445, A: Cys507, A: Ile509, A: His512, A: Met517, A: Hoh641,

conact list:


AtomAtomDistance (A)
CuO A:Thr4444.87
CuNE2 A:His4454.22
CuCB A:His4453.53
CuND1 A:His4452.13
CuCD2 A:His4454.32
CuCE1 A:His4453.09
CuCG A:His4453.14
CuCA A:His4454.06
CuCB A:Cys5073.15
CuSG A:Cys5072.14
CuCA A:Cys5074.55
CuCB A:Ile5094.25
CuCD1 A:Ile5094.44
CuCG2 A:Ile5094.91
CuCG1 A:Ile5094.60
CuNE2 A:His5124.20
CuCB A:His5123.37
CuND1 A:His5122.10
CuCD2 A:His5124.26
CuCE1 A:His5123.09
CuCG A:His5123.07
CuCA A:His5124.86
CuCB A:Met5174.94
CuCE A:Met5173.99
CuCG A:Met5174.40
CuSD A:Met5173.02
CuO A:Hoh6414.57

interactive model:


Copper binding site 2 out of 9 in 1asp


Copper binding site 2 out of 9 in 1asp
Click to enlarge
stereopicture of Copper binding site 2 out of 9 in 1asp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 1asp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His60, A: Thr75, A: His104, A: His106, A: His448, A: His450, A: Ala504, A: His506, A: Cu556, A: Cu557, A: Peo560, A: Hoh812,

conact list:


AtomAtomDistance (A)
CuNE2 A:His604.68
CuCD2 A:His604.62
CuCG2 A:Thr754.87
CuCE1 A:His1044.78
CuNE2 A:His1062.07
CuND1 A:His1064.29
CuCD2 A:His1063.12
CuCE1 A:His1063.05
CuCG A:His1064.33
CuNE2 A:His4484.72
CuCD2 A:His4484.10
CuNE2 A:His4502.01
CuND1 A:His4503.91
CuCD2 A:His4503.04
CuCE1 A:His4502.78
CuCG A:His4504.05
CuCB A:Ala5044.89
CuNE2 A:His5062.02
CuND1 A:His5064.05
CuCD2 A:His5063.08
CuCE1 A:His5062.98
CuCG A:His5064.15
CuCU A:Cu5564.81
CuCU A:Cu5574.40
CuO1 A:Peo5601.87
CuO2 A:Peo5603.00
CuO A:Hoh8124.55

interactive model:


Copper binding site 3 out of 9 in 1asp


Copper binding site 3 out of 9 in 1asp
Click to enlarge
stereopicture of Copper binding site 3 out of 9 in 1asp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Copper in the PDB 1asp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His60, A: His62, A: Phe102, A: His104, A: His448, A: His508, A: Cu555, A: Cu557, A: Peo560,

conact list:


AtomAtomDistance (A)
CuNE2 A:His604.34
CuCD2 A:His604.00
CuNE2 A:His623.92
CuCB A:His623.57
CuND1 A:His622.00
CuCD2 A:His624.06
CuCE1 A:His622.83
CuCG A:His623.00
CuCA A:His624.62
CuCE2 A:Phe1024.47
CuCZ A:Phe1024.66
CuNE2 A:His1042.11
CuND1 A:His1044.14
CuCD2 A:His1043.06
CuCE1 A:His1043.02
CuCG A:His1044.18
CuNE2 A:His4484.15
CuND1 A:His4484.88
CuCD2 A:His4484.11
CuCE1 A:His4484.63
CuCG A:His4484.61
CuNE2 A:His5082.19
CuND1 A:His5084.23
CuCD2 A:His5083.10
CuCE1 A:His5083.14
CuCG A:His5084.26
CuCU A:Cu5554.81
CuCU A:Cu5573.74
CuO1 A:Peo5603.90
CuO2 A:Peo5603.55

interactive model:


Copper binding site 4 out of 9 in 1asp


Copper binding site 4 out of 9 in 1asp
Click to enlarge
stereopicture of Copper binding site 4 out of 9 in 1asp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Copper in the PDB 1asp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His60, A: Trp61, A: His62, A: Gly63, A: His104, A: His448, A: Leu449, A: His450, A: Cu555, A: Cu556, A: Oh558, A: Hoh642, A: Hoh772,

conact list:


AtomAtomDistance (A)
CuNE2 A:His601.99
CuND1 A:His603.95
CuCD2 A:His602.94
CuCE1 A:His602.85
CuCG A:His604.01
CuC A:Trp614.92
CuO A:Trp614.66
CuNE2 A:His624.58
CuN A:His624.60
CuCB A:His624.03
CuND1 A:His623.98
CuCD2 A:His624.21
CuC A:His624.54
CuCE1 A:His624.45
CuCG A:His623.78
CuCA A:His623.72
CuN A:Gly634.27
CuNE2 A:His1044.88
CuNE2 A:His4482.06
CuND1 A:His4484.02
CuCD2 A:His4482.95
CuCE1 A:His4482.95
CuCG A:His4484.05
CuO A:Leu4494.84
CuNE2 A:His4503.24
CuCB A:His4504.75
CuND1 A:His4504.05
CuCD2 A:His4503.32
CuCE1 A:His4503.73
CuCG A:His4503.83
CuCA A:His4504.74
CuCU A:Cu5554.40
CuCU A:Cu5563.74
CuO A:Oh5582.06
CuO A:Hoh6424.52
CuO A:Hoh7724.36

interactive model:


Copper binding site 5 out of 9 in 1asp


Copper binding site 5 out of 9 in 1asp
Click to enlarge
stereopicture of Copper binding site 5 out of 9 in 1asp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Copper in the PDB 1asp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His286, A: Pro287, B: His286, B: Pro287, A: Hoh621, A: Hoh888, B: Hoh638,

conact list:


AtomAtomDistance (A)
CuNE2 A:His2862.06
CuND1 A:His2863.95
CuCD2 A:His2862.98
CuCE1 A:His2862.88
CuCG A:His2864.01
CuO A:Pro2874.13
CuCD A:Pro2874.77
CuNE2 B:His2862.04
CuND1 B:His2864.01
CuCD2 B:His2862.95
CuCE1 B:His2862.93
CuCG B:His2864.03
CuO B:Pro2874.13
CuCD B:Pro2874.93
CuO A:Hoh6214.52
CuO A:Hoh8883.31
CuO B:Hoh6384.30

interactive model:


Copper binding site 6 out of 9 in 1asp


Copper binding site 6 out of 9 in 1asp
Click to enlarge
stereopicture of Copper binding site 6 out of 9 in 1asp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Copper in the PDB 1asp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Thr444, B: His445, B: Cys507, B: Ile509, B: His512, B: Met517, B: Hoh658,

conact list:


AtomAtomDistance (A)
CuO B:Thr4444.92
CuNE2 B:His4454.13
CuCB B:His4453.53
CuND1 B:His4452.13
CuCD2 B:His4454.21
CuCE1 B:His4453.05
CuCG B:His4453.08
CuCA B:His4454.13
CuCB B:Cys5073.26
CuSG B:Cys5072.12
CuCA B:Cys5074.59
CuCB B:Ile5094.35
CuCD1 B:Ile5094.49
CuCG1 B:Ile5094.76
CuNE2 B:His5124.20
CuCB B:His5123.41
CuND1 B:His5122.09
CuCD2 B:His5124.27
CuCE1 B:His5123.07
CuCG B:His5123.09
CuCA B:His5124.94
CuCB B:Met5174.95
CuCE B:Met5173.73
CuCG B:Met5174.41
CuSD B:Met5172.83
CuO B:Hoh6584.51

interactive model:


Copper binding site 7 out of 9 in 1asp


Copper binding site 7 out of 9 in 1asp
Click to enlarge
stereopicture of Copper binding site 7 out of 9 in 1asp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Copper in the PDB 1asp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His60, B: His104, B: His106, B: His448, B: His450, B: Ala504, B: His506, B: Cu556, B: Cu557, B: Peo559, B: Hoh718,

conact list:


AtomAtomDistance (A)
CuNE2 B:His604.85
CuCD2 B:His604.71
CuCE1 B:His1044.90
CuNE2 B:His1062.20
CuND1 B:His1064.30
CuCD2 B:His1063.10
CuCE1 B:His1063.18
CuCG B:His1064.28
CuNE2 B:His4484.74
CuCD2 B:His4484.09
CuNE2 B:His4502.04
CuND1 B:His4503.98
CuCD2 B:His4503.01
CuCE1 B:His4502.86
CuCG B:His4504.07
CuCB B:Ala5044.81
CuNE2 B:His5062.01
CuND1 B:His5063.90
CuCD2 B:His5062.99
CuCE1 B:His5062.93
CuCG B:His5064.00
CuCU B:Cu5564.79
CuCU B:Cu5574.51
CuO1 B:Peo5592.00
CuO2 B:Peo5592.89
CuO B:Hoh7184.78

interactive model:


Copper binding site 8 out of 9 in 1asp


Copper binding site 8 out of 9 in 1asp
Click to enlarge
stereopicture of Copper binding site 8 out of 9 in 1asp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Copper in the PDB 1asp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His60, B: His62, B: Phe102, B: His104, B: His448, B: His508, B: Cu555, B: Cu557, B: Peo559,

conact list:


AtomAtomDistance (A)
CuNE2 B:His604.41
CuCD2 B:His604.09
CuNE2 B:His624.12
CuCB B:His623.67
CuND1 B:His622.09
CuCD2 B:His624.28
CuCE1 B:His622.95
CuCG B:His623.17
CuCA B:His624.73
CuCE2 B:Phe1024.37
CuCZ B:Phe1024.61
CuNE2 B:His1042.07
CuND1 B:His1044.10
CuCD2 B:His1043.03
CuCE1 B:His1042.97
CuCG B:His1044.15
CuNE2 B:His4484.05
CuND1 B:His4485.00
CuCD2 B:His4483.98
CuCE1 B:His4484.68
CuCG B:His4484.62
CuNE2 B:His5082.15
CuND1 B:His5084.20
CuCD2 B:His5083.07
CuCE1 B:His5083.09
CuCG B:His5084.21
CuCU B:Cu5554.79
CuCU B:Cu5573.70
CuO1 B:Peo5594.00
CuO2 B:Peo5593.12

interactive model:


Copper binding site 9 out of 9 in 1asp


Copper binding site 9 out of 9 in 1asp
Click to enlarge
stereopicture of Copper binding site 9 out of 9 in 1asp
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Copper in the PDB 1asp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His60, B: Trp61, B: His62, B: Gly63, B: His104, B: His448, B: Leu449, B: His450, B: Cu555, B: Cu556, B: Oh558, B: Hoh659,

conact list:


AtomAtomDistance (A)
CuNE2 B:His602.02
CuND1 B:His604.03
CuCD2 B:His602.94
CuCE1 B:His602.94
CuCG B:His604.04
CuC B:Trp614.92
CuO B:Trp614.69
CuNE2 B:His624.73
CuN B:His624.48
CuCB B:His623.85
CuND1 B:His623.51
CuCD2 B:His624.51
CuC B:His624.36
CuCE1 B:His624.20
CuCG B:His623.70
CuCA B:His623.57
CuN B:Gly634.06
CuNE2 B:His1044.83
CuNE2 B:His4482.01
CuND1 B:His4483.99
CuCD2 B:His4482.91
CuCE1 B:His4482.92
CuCG B:His4484.01
CuO B:Leu4494.99
CuNE2 B:His4503.38
CuCB B:His4504.82
CuND1 B:His4503.87
CuCD2 B:His4503.58
CuCE1 B:His4503.60
CuCG B:His4503.86
CuCA B:His4504.84
CuCU B:Cu5554.51
CuCU B:Cu5563.70
CuO B:Oh5582.05
CuO B:Hoh6594.42

interactive model:




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