Atomistry » Copper » PDB 1a2v-1baw » 1ar1
Atomistry »
  Copper »
    PDB 1a2v-1baw »
      1ar1 »

Copper in PDB 1ar1: Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment

Enzymatic activity of Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment

All present enzymatic activity of Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment:
1.9.3.1;

Protein crystallography data

The structure of Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment, PDB code: 1ar1 was solved by C.Ostermeier, A.Harrenga, U.Ermler, H.Michel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 93.500, 151.000, 156.700, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 26.1

Other elements in 1ar1:

The structure of Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Iron (Fe) 2 atoms
Calcium (Ca) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment (pdb code 1ar1). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment, PDB code: 1ar1:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 1ar1

Go back to Copper Binding Sites List in 1ar1
Copper binding site 1 out of 3 in the Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu559

b:47.1
occ:1.00
 ND1 A:HIS276 2.2 79.3 1.0
NE2 A:HIS326 2.2 52.0 1.0
NE2 A:HIS325 2.2 55.3 1.0
CE1 A:HIS276 2.9 82.6 1.0
CE1 A:HIS325 3.0 60.7 1.0
CE1 A:HIS326 3.2 52.5 1.0
CD2 A:HIS326 3.2 43.6 1.0
CG A:HIS276 3.3 78.8 1.0
CD2 A:HIS325 3.4 62.5 1.0
CB A:HIS276 3.8 67.4 1.0
NA A:HEA563 4.0 49.1 1.0
CA A:HIS276 4.1 57.6 1.0
NE2 A:HIS276 4.1 90.7 1.0
ND1 A:HIS325 4.2 63.2 1.0
C1A A:HEA563 4.2 48.8 1.0
ND1 A:HIS326 4.3 56.3 1.0
ND A:HEA563 4.3 58.8 1.0
CD2 A:HIS276 4.3 86.9 1.0
CG A:HIS326 4.3 50.9 1.0
C4A A:HEA563 4.4 47.7 1.0
CG A:HIS325 4.4 59.8 1.0
CG2 A:VAL279 4.4 56.9 1.0
FE A:HEA563 4.5 46.9 1.0
CHA A:HEA563 4.5 50.0 1.0
C4D A:HEA563 4.5 57.1 1.0
NB A:HEA563 4.7 54.7 1.0
C2A A:HEA563 4.8 51.8 1.0
C3A A:HEA563 4.8 47.1 1.0
CHB A:HEA563 4.8 53.4 1.0
NC A:HEA563 4.9 59.1 1.0
N A:HIS276 4.9 55.5 1.0
C1D A:HEA563 5.0 57.9 1.0
CG1 A:VAL279 5.0 52.2 1.0
C1B A:HEA563 5.0 56.9 1.0

Copper binding site 2 out of 3 in 1ar1

Go back to Copper Binding Sites List in 1ar1
Copper binding site 2 out of 3 in the Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu270

b:40.4
occ:1.00
 ND1 B:HIS224 2.1 39.4 1.0
SG B:CYS220 2.2 52.3 1.0
SG B:CYS216 2.2 56.7 1.0
CU B:CU271 2.5 44.8 1.0
O B:GLU218 2.8 51.6 1.0
CB B:CYS216 2.9 45.8 1.0
CG B:HIS224 3.0 48.5 1.0
CE1 B:HIS224 3.2 48.2 1.0
CB B:HIS224 3.2 50.5 1.0
CB B:CYS220 3.3 44.1 1.0
O B:HIS224 3.4 56.1 1.0
CA B:HIS224 3.4 53.4 1.0
N B:CYS220 3.7 49.7 1.0
C B:GLU218 3.7 51.2 1.0
C B:HIS224 3.8 52.2 1.0
CA B:CYS220 4.1 50.3 1.0
SD B:MET227 4.1 35.9 1.0
CD2 B:HIS224 4.2 51.9 1.0
CA B:CYS216 4.2 47.6 1.0
NE2 B:HIS224 4.2 55.7 1.0
C B:LEU219 4.3 53.5 1.0
C B:CYS216 4.3 49.8 1.0
N B:GLU218 4.3 54.3 1.0
O B:CYS216 4.4 49.2 1.0
N B:LEU219 4.5 50.2 1.0
CA B:LEU219 4.5 50.5 1.0
ND1 B:HIS181 4.5 38.2 1.0
CA B:GLU218 4.7 53.4 1.0
CG B:MET227 4.7 29.4 1.0
N B:HIS224 4.7 56.7 1.0
N B:SER217 4.8 51.9 1.0
CA B:HIS181 4.9 46.6 1.0
CB B:HIS181 4.9 44.9 1.0

Copper binding site 3 out of 3 in 1ar1

Go back to Copper Binding Sites List in 1ar1
Copper binding site 3 out of 3 in the Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu271

b:44.8
occ:1.00
 ND1 B:HIS181 2.1 38.2 1.0
SG B:CYS220 2.2 52.3 1.0
SG B:CYS216 2.2 56.7 1.0
CU B:CU270 2.5 40.4 1.0
SD B:MET227 2.6 35.9 1.0
CB B:CYS220 3.0 44.1 1.0
CG B:HIS181 3.0 48.5 1.0
CE1 B:HIS181 3.1 45.1 1.0
CE B:MET227 3.2 14.5 1.0
CB B:HIS181 3.3 44.9 1.0
CB B:CYS216 3.5 45.8 1.0
CA B:HIS181 3.9 46.6 1.0
CG B:MET227 3.9 29.4 1.0
O B:GLU218 4.2 51.6 1.0
CD2 B:HIS181 4.2 49.5 1.0
NE2 B:HIS181 4.3 51.8 1.0
CA B:CYS220 4.5 50.3 1.0
ND1 B:HIS224 4.6 39.4 1.0
CA B:HIS224 4.8 53.4 1.0
O B:HIS119 4.8 39.0 1.0
O B:ILE180 4.8 46.0 1.0
N B:CYS220 4.9 49.7 1.0
O B:HIS224 4.9 56.1 1.0
N B:HIS181 4.9 45.8 1.0
CA B:CYS216 4.9 47.6 1.0
N B:ALA182 5.0 49.5 1.0
C B:HIS181 5.0 47.6 1.0

Reference:

C.Ostermeier, A.Harrenga, U.Ermler, H.Michel. Structure at 2.7 A Resolution of the Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed with An Antibody Fv Fragment. Proc.Natl.Acad.Sci.Usa V. 94 10547 1997.
ISSN: ISSN 0027-8424
PubMed: 9380672
DOI: 10.1073/PNAS.94.20.10547
Page generated: Tue Jul 30 21:30:23 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy