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Copper in PDB 1aqr: Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure

Copper Binding Sites:

The binding sites of Copper atom in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure (pdb code 1aqr). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 7 binding sites of Copper where determined in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure, PDB code: 1aqr:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7;

Copper binding site 1 out of 7 in 1aqr

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Copper binding site 1 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu41

b:0.4
occ:1.00
HB2 A:CYS7 1.8 0.5 1.0
CB A:CYS7 2.3 0.5 1.0
SG A:CYS9 2.3 0.4 1.0
SG A:CYS7 2.4 0.4 1.0
HA A:CYS7 2.4 0.5 1.0
SG A:CYS24 2.5 0.6 1.0
CU A:CU147 2.5 0.4 1.0
HB2 A:CYS24 2.6 0.5 1.0
CA A:CYS7 2.8 0.5 1.0
CU A:CU144 2.8 0.5 1.0
CB A:CYS24 2.9 0.5 1.0
HB3 A:CYS24 3.0 0.5 1.0
HB2 A:CYS9 3.2 0.3 1.0
HB3 A:CYS7 3.2 0.5 1.0
CU A:CU143 3.3 0.3 1.0
H A:CYS9 3.3 0.5 1.0
CB A:CYS9 3.4 0.3 1.0
C A:CYS7 3.7 0.5 1.0
N A:CYS7 4.0 0.6 1.0
HB2 A:CYS26 4.0 0.8 1.0
HB3 A:CYS9 4.0 0.3 1.0
SG A:CYS14 4.1 0.3 1.0
SG A:CYS38 4.1 0.5 1.0
N A:CYS9 4.2 0.5 1.0
O A:CYS7 4.2 0.5 1.0
H A:GLN8 4.4 0.7 1.0
H A:CYS7 4.4 0.7 1.0
N A:GLN8 4.4 0.6 1.0
CA A:CYS24 4.4 0.7 1.0
CA A:CYS9 4.5 0.4 1.0
SG A:CYS26 4.5 1.0 1.0
HE1 A:HIS5 4.5 0.8 1.0
CU A:CU146 4.6 0.5 1.0
HA A:GLN21 4.6 0.5 1.0
O A:CYS20 4.7 0.5 1.0
O A:GLU6 4.7 0.7 1.0
C A:GLU6 4.8 0.7 1.0
CB A:CYS26 4.8 0.8 1.0
H A:CYS24 4.8 0.7 1.0
CU A:CU142 4.8 0.3 1.0
HE22 A:GLN21 4.9 3.0 1.0
HA A:CYS24 4.9 0.7 1.0
HA A:CYS9 4.9 0.5 1.0
HB3 A:CYS14 5.0 0.3 1.0

Copper binding site 2 out of 7 in 1aqr

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Copper binding site 2 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu42

b:0.3
occ:1.00
SG A:CYS14 2.2 0.3 1.0
SG A:CYS36 2.3 0.4 1.0
HB3 A:CYS9 2.5 0.3 1.0
SG A:CYS11 2.5 0.4 1.0
CU A:CU145 2.6 0.5 1.0
HB2 A:CYS11 2.7 0.3 1.0
CB A:CYS11 3.1 0.3 1.0
HB2 A:CYS14 3.1 0.3 1.0
CU A:CU146 3.3 0.5 1.0
CB A:CYS14 3.3 0.2 1.0
CU A:CU147 3.3 0.4 1.0
CB A:CYS9 3.3 0.3 1.0
HB2 A:CYS36 3.4 0.5 1.0
HB3 A:CYS11 3.5 0.4 1.0
CB A:CYS36 3.5 0.5 1.0
SG A:CYS9 3.7 0.4 1.0
HB2 A:CYS9 3.7 0.3 1.0
H A:CYS11 3.8 0.4 1.0
HB2 A:CYS38 3.8 0.5 1.0
HB3 A:CYS14 3.9 0.3 1.0
HB3 A:CYS36 3.9 0.6 1.0
SG A:CYS30 3.9 0.3 1.0
H A:CYS14 4.4 0.3 1.0
CA A:CYS11 4.4 0.4 1.0
N A:CYS11 4.5 0.4 1.0
CA A:CYS14 4.5 0.3 1.0
N A:CYS14 4.5 0.3 1.0
CA A:CYS9 4.5 0.4 1.0
HA A:CYS9 4.6 0.5 1.0
CB A:CYS38 4.6 0.6 1.0
HA A:CYS14 4.7 0.3 1.0
CA A:CYS36 4.7 0.6 1.0
HA A:CYS36 4.7 0.6 1.0
H A:SER13 4.8 0.4 1.0
SG A:CYS38 4.8 0.5 1.0
HB3 A:CYS38 4.8 0.7 1.0
CU A:CU141 4.8 0.4 1.0
CU A:CU144 5.0 0.5 1.0

Copper binding site 3 out of 7 in 1aqr

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Copper binding site 3 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu43

b:0.3
occ:1.00
SG A:CYS20 2.3 0.5 1.0
SG A:CYS7 2.5 0.4 1.0
HB2 A:CYS24 2.6 0.5 1.0
CU A:CU147 2.6 0.4 1.0
O A:CYS20 2.9 0.5 1.0
HB3 A:CYS24 3.0 0.5 1.0
HB2 A:CYS7 3.1 0.5 1.0
SG A:CYS38 3.2 0.5 1.0
HB2 A:CYS20 3.3 0.6 1.0
CB A:CYS7 3.3 0.5 1.0
CB A:CYS24 3.3 0.5 1.0
C A:CYS20 3.3 0.5 1.0
CU A:CU141 3.3 0.4 1.0
CB A:CYS20 3.3 0.6 1.0
HE21 A:GLN21 3.4 2.4 1.0
HA A:GLN21 3.4 0.5 1.0
HB3 A:CYS7 3.4 0.5 1.0
SG A:CYS14 3.7 0.3 1.0
NE2 A:GLN21 3.7 2.4 1.0
HA A:CYS14 3.8 0.3 1.0
N A:GLN21 3.9 0.5 1.0
CA A:CYS20 3.9 0.5 1.0
HE22 A:GLN21 3.9 3.0 1.0
CU A:CU144 4.0 0.5 1.0
HB2 A:CYS9 4.0 0.3 1.0
HG2 A:GLN21 4.0 1.7 1.0
CA A:GLN21 4.1 0.5 1.0
HA A:CYS24 4.2 0.7 1.0
HB3 A:CYS20 4.2 0.7 1.0
H A:CYS20 4.3 0.5 1.0
CD A:GLN21 4.3 1.9 1.0
CA A:CYS24 4.3 0.7 1.0
H A:GLN21 4.5 0.5 1.0
HB3 A:CYS14 4.5 0.3 1.0
SG A:CYS24 4.5 0.6 1.0
O A:ASN17 4.5 0.4 1.0
CB A:CYS14 4.6 0.2 1.0
N A:CYS20 4.6 0.5 1.0
CG A:GLN21 4.6 1.1 1.0
CA A:CYS14 4.6 0.3 1.0
CA A:CYS7 4.7 0.5 1.0
HA A:CYS20 4.8 0.6 1.0
CB A:CYS9 4.8 0.3 1.0
H A:CYS24 4.8 0.7 1.0
SG A:CYS9 4.8 0.4 1.0
N A:CYS24 4.9 0.7 1.0
CB A:CYS38 4.9 0.6 1.0
H A:GLY39 4.9 1.6 1.0
HA A:GLU18 5.0 0.5 1.0
O A:CYS7 5.0 0.5 1.0

Copper binding site 4 out of 7 in 1aqr

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Copper binding site 4 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu44

b:0.5
occ:1.00
HB2 A:CYS24 1.9 0.5 1.0
SG A:CYS26 2.2 1.0 1.0
SG A:CYS38 2.3 0.5 1.0
CB A:CYS24 2.4 0.5 1.0
SG A:CYS24 2.5 0.6 1.0
CU A:CU147 2.5 0.4 1.0
CU A:CU141 2.8 0.4 1.0
HB2 A:CYS26 3.1 0.8 1.0
HA A:CYS38 3.1 0.8 1.0
CA A:CYS24 3.2 0.7 1.0
CB A:CYS26 3.3 0.8 1.0
CU A:CU146 3.3 0.5 1.0
HB2 A:CYS38 3.3 0.5 1.0
CB A:CYS38 3.3 0.6 1.0
C A:CYS24 3.3 0.8 1.0
HA A:CYS24 3.3 0.7 1.0
HB3 A:CYS24 3.4 0.5 1.0
H A:CYS26 3.5 0.8 1.0
N A:SER25 3.6 0.9 1.0
H A:SER25 3.6 0.8 1.0
HB2 A:CYS7 3.6 0.5 1.0
CA A:CYS38 3.7 0.7 1.0
N A:CYS26 3.8 0.8 1.0
O A:CYS24 3.9 0.9 1.0
CU A:CU143 4.0 0.3 1.0
HB3 A:CYS26 4.1 0.9 1.0
HE1 A:HIS5 4.1 0.8 1.0
SG A:CYS9 4.2 0.4 1.0
CA A:CYS26 4.2 0.7 1.0
C A:SER25 4.3 0.9 1.0
HB3 A:CYS38 4.3 0.7 1.0
H A:GLY39 4.4 1.6 1.0
N A:CYS24 4.5 0.7 1.0
N A:CYS38 4.5 0.7 1.0
CB A:CYS7 4.6 0.5 1.0
CA A:SER25 4.6 1.0 1.0
SG A:CYS14 4.7 0.3 1.0
SG A:CYS36 4.7 0.4 1.0
SG A:CYS7 4.7 0.4 1.0
H A:CYS24 4.8 0.7 1.0
HA A:CYS26 4.8 0.8 1.0
H A:CYS38 4.9 0.6 1.0
HA A:CYS7 4.9 0.5 1.0
C A:CYS38 5.0 1.0 1.0
O A:SER25 5.0 1.0 1.0
CU A:CU142 5.0 0.3 1.0

Copper binding site 5 out of 7 in 1aqr

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Copper binding site 5 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu45

b:0.5
occ:1.00
SG A:CYS30 2.2 0.3 1.0
SG A:CYS11 2.4 0.4 1.0
CU A:CU142 2.6 0.3 1.0
O A:CYS30 2.9 0.7 1.0
HB3 A:CYS9 3.0 0.3 1.0
HB3 A:CYS30 3.2 0.6 1.0
SG A:CYS9 3.3 0.4 1.0
CU A:CU146 3.3 0.5 1.0
CB A:CYS30 3.3 0.5 1.0
HB2 A:CYS36 3.4 0.5 1.0
SG A:CYS36 3.5 0.4 1.0
CB A:CYS9 3.6 0.3 1.0
HA A:CYS9 3.7 0.5 1.0
C A:CYS30 3.7 0.7 1.0
CB A:CYS36 3.9 0.5 1.0
CA A:CYS30 3.9 0.5 1.0
HA A:CYS30 4.1 0.5 1.0
CB A:CYS11 4.2 0.3 1.0
O A:SER32 4.2 0.6 1.0
H A:CYS11 4.2 0.4 1.0
CA A:CYS9 4.2 0.4 1.0
HB2 A:CYS30 4.2 0.5 1.0
HA A:CYS36 4.3 0.6 1.0
HB2 A:CYS11 4.4 0.3 1.0
SG A:CYS14 4.4 0.3 1.0
H A:GLN10 4.5 0.5 1.0
HB2 A:CYS9 4.5 0.3 1.0
HB3 A:CYS11 4.6 0.4 1.0
CA A:CYS36 4.7 0.6 1.0
N A:ASN31 4.8 0.8 1.0
HB3 A:CYS36 4.8 0.6 1.0
CU A:CU147 4.8 0.4 1.0
HB2 A:CYS14 4.9 0.3 1.0
HA A:ASN31 4.9 1.1 1.0
N A:CYS11 5.0 0.4 1.0
HB3 A:CYS26 5.0 0.9 1.0

Copper binding site 6 out of 7 in 1aqr

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Copper binding site 6 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu46

b:0.5
occ:1.00
SG A:CYS36 2.2 0.4 1.0
SG A:CYS26 2.3 1.0 1.0
SG A:CYS30 2.3 0.3 1.0
HA A:CYS36 2.8 0.6 1.0
HB2 A:CYS38 2.9 0.5 1.0
HB3 A:CYS26 2.9 0.9 1.0
HD2 A:PRO37 3.1 0.6 1.0
CB A:CYS26 3.1 0.8 1.0
CU A:CU145 3.3 0.5 1.0
CU A:CU142 3.3 0.3 1.0
CU A:CU144 3.3 0.5 1.0
CB A:CYS36 3.3 0.5 1.0
CA A:CYS36 3.4 0.6 1.0
HB2 A:CYS26 3.5 0.8 1.0
CU A:CU147 3.7 0.4 1.0
HB2 A:CYS36 3.7 0.5 1.0
H A:CYS38 3.8 0.6 1.0
C A:CYS36 3.8 0.6 1.0
CB A:CYS38 3.8 0.6 1.0
CB A:CYS30 3.8 0.5 1.0
CD A:PRO37 3.9 0.7 1.0
HB2 A:CYS30 3.9 0.5 1.0
N A:PRO37 3.9 0.7 1.0
N A:CYS38 4.0 0.7 1.0
SG A:CYS9 4.1 0.4 1.0
HB3 A:CYS30 4.2 0.6 1.0
SG A:CYS38 4.2 0.5 1.0
HA A:CYS38 4.2 0.8 1.0
HB3 A:CYS36 4.3 0.6 1.0
CA A:CYS38 4.3 0.7 1.0
O A:CYS36 4.4 0.6 1.0
CA A:CYS26 4.5 0.7 1.0
HD3 A:PRO37 4.5 0.7 1.0
C A:PRO37 4.5 0.8 1.0
HA A:CYS26 4.6 0.8 1.0
CU A:CU141 4.6 0.4 1.0
SG A:CYS14 4.6 0.3 1.0
HB3 A:CYS38 4.6 0.7 1.0
N A:CYS36 4.8 0.6 1.0
HB3 A:CYS9 4.8 0.3 1.0
HA A:CYS30 4.9 0.5 1.0
HD2 A:PRO27 4.9 0.7 1.0
HG2 A:PRO37 4.9 0.9 1.0
CA A:PRO37 4.9 0.8 1.0
CA A:CYS30 4.9 0.5 1.0

Copper binding site 7 out of 7 in 1aqr

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Copper binding site 7 out of 7 in the Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Cu-Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu47

b:0.4
occ:1.00
SG A:CYS14 2.2 0.3 1.0
SG A:CYS38 2.3 0.5 1.0
CU A:CU144 2.5 0.5 1.0
CU A:CU141 2.5 0.4 1.0
CU A:CU143 2.6 0.3 1.0
HB2 A:CYS24 2.7 0.5 1.0
HB2 A:CYS38 3.1 0.5 1.0
SG A:CYS9 3.3 0.4 1.0
CU A:CU142 3.3 0.3 1.0
SG A:CYS7 3.3 0.4 1.0
CB A:CYS38 3.3 0.6 1.0
HB2 A:CYS9 3.3 0.3 1.0
CB A:CYS9 3.6 0.3 1.0
CB A:CYS24 3.6 0.5 1.0
HB3 A:CYS9 3.6 0.3 1.0
CU A:CU146 3.7 0.5 1.0
HB2 A:CYS7 3.7 0.5 1.0
HB3 A:CYS38 3.8 0.7 1.0
CB A:CYS14 3.9 0.2 1.0
SG A:CYS36 4.0 0.4 1.0
HB3 A:CYS24 4.0 0.5 1.0
SG A:CYS24 4.0 0.6 1.0
SG A:CYS26 4.1 1.0 1.0
HA A:CYS14 4.1 0.3 1.0
HB3 A:CYS14 4.1 0.3 1.0
CB A:CYS7 4.2 0.5 1.0
SG A:CYS20 4.3 0.5 1.0
HA A:CYS38 4.5 0.8 1.0
CA A:CYS38 4.6 0.7 1.0
HB2 A:CYS14 4.6 0.3 1.0
CA A:CYS14 4.6 0.3 1.0
HA A:CYS24 4.7 0.7 1.0
H A:GLY39 4.7 1.6 1.0
CA A:CYS24 4.8 0.7 1.0
CU A:CU145 4.8 0.5 1.0
H A:CYS9 4.9 0.5 1.0
HB3 A:CYS7 4.9 0.5 1.0
HA A:CYS7 4.9 0.5 1.0
HB2 A:CYS26 5.0 0.8 1.0
HB2 A:CYS20 5.0 0.6 1.0

Reference:

C.W.Peterson, S.S.Narula, I.M.Armitage. 3D Solution Structure of Copper and Silver-Substituted Yeast Metallothioneins. Febs Lett. V. 379 85 1996.
ISSN: ISSN 0014-5793
PubMed: 8566237
DOI: 10.1016/0014-5793(95)01492-6
Page generated: Sun Dec 13 10:57:43 2020

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