Atomistry » Copper » PDB 1a2v-1baw » 1a8v
Atomistry »
  Copper »
    PDB 1a2v-1baw »
      1a8v »

Copper in PDB 1a8v: Structure of the Rna-Binding Domain of the Rho Transcription Terminator

Protein crystallography data

The structure of Structure of the Rna-Binding Domain of the Rho Transcription Terminator, PDB code: 1a8v was solved by D.Fass, C.Bogden, J.M.Berger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 30.420, 36.160, 54.250, 99.06, 102.64, 96.43
R / Rfree (%) 19.3 / 26.1

Copper Binding Sites:

The binding sites of Copper atom in the Structure of the Rna-Binding Domain of the Rho Transcription Terminator (pdb code 1a8v). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Structure of the Rna-Binding Domain of the Rho Transcription Terminator, PDB code: 1a8v:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 1a8v

Go back to Copper Binding Sites List in 1a8v
Copper binding site 1 out of 2 in the Structure of the Rna-Binding Domain of the Rho Transcription Terminator


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of the Rna-Binding Domain of the Rho Transcription Terminator within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu119

b:2.2
occ:1.00
OE1 B:GLU47 1.9 24.3 1.0
N A:GLY-1 2.0 19.9 1.0
N A:HIS0 2.1 24.9 1.0
ND1 A:HIS0 2.2 32.7 1.0
C A:GLY-1 2.5 26.9 1.0
CA A:GLY-1 2.5 22.9 1.0
O A:HOH120 2.7 16.5 1.0
CD B:GLU47 2.7 21.5 1.0
OE2 B:GLU47 2.9 19.0 1.0
CE1 A:HIS0 3.1 28.0 1.0
CG A:HIS0 3.3 26.4 1.0
CA A:HIS0 3.4 23.0 1.0
O A:GLY-1 3.7 24.6 1.0
CB A:HIS0 3.8 24.9 1.0
N A:MET1 3.8 23.5 1.0
CG A:GLU47 4.0 20.5 1.0
C A:HIS0 4.1 23.1 1.0
CG B:GLU47 4.2 18.3 1.0
NE2 A:HIS0 4.2 29.1 1.0
CD A:GLU47 4.3 25.4 1.0
O A:ASP48 4.3 19.7 1.0
NE2 A:HIS42 4.3 23.5 1.0
OE2 A:GLU47 4.4 19.6 1.0
CD2 A:HIS0 4.4 26.0 1.0
CB B:GLU47 4.8 15.2 1.0
OE1 A:GLU47 4.9 28.5 1.0
CA B:GLU47 4.9 21.0 1.0

Copper binding site 2 out of 2 in 1a8v

Go back to Copper Binding Sites List in 1a8v
Copper binding site 2 out of 2 in the Structure of the Rna-Binding Domain of the Rho Transcription Terminator


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of the Rna-Binding Domain of the Rho Transcription Terminator within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu119

b:2.2
occ:1.00
N B:GLY-1 1.8 34.2 1.0
ND1 B:HIS0 1.9 31.8 1.0
OE1 A:GLU47 1.9 28.5 1.0
N B:HIS0 2.1 28.7 1.0
O B:HOH121 2.6 17.3 1.0
CA B:GLY-1 2.6 30.6 1.0
C B:GLY-1 2.7 29.7 1.0
CD A:GLU47 2.8 25.4 1.0
CE1 B:HIS0 2.9 22.3 1.0
CG B:HIS0 3.0 25.2 1.0
OE2 A:GLU47 3.1 19.6 1.0
CA B:HIS0 3.2 25.4 1.0
CB B:HIS0 3.4 27.2 1.0
N B:MET1 3.7 23.2 1.0
O B:GLY-1 3.9 33.6 1.0
C B:HIS0 4.0 26.1 1.0
NE2 B:HIS0 4.1 25.7 1.0
CD2 B:HIS0 4.1 24.3 1.0
CG B:GLU47 4.1 18.3 1.0
NE2 B:HIS42 4.1 23.4 1.0
CG A:GLU47 4.3 20.5 1.0
O B:ASP48 4.4 22.7 1.0
CD B:GLU47 4.4 21.5 1.0
OE2 B:GLU47 4.5 19.0 1.0
CB A:GLU47 4.8 18.9 1.0
CE1 B:HIS42 4.8 26.4 1.0
CA A:GLU47 4.8 20.1 1.0
CA B:MET1 5.0 20.7 1.0

Reference:

C.E.Bogden, D.Fass, N.Bergman, M.D.Nichols, J.M.Berger. The Structural Basis For Terminator Recognition By the Rho Transcription Termination Factor. Mol.Cell V. 3 487 1999.
ISSN: ISSN 1097-2765
PubMed: 10230401
DOI: 10.1016/S1097-2765(00)80476-1
Page generated: Tue Jul 30 21:27:41 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy