Copper in PDB 8zyg: Crystal Structure of A Cupin Protein (TM1459, I49C-4PY/H52A/C106D Mutant) in Copper (Cu) Substituted Form

The structure of Crystal Structure of A Cupin Protein (TM1459, I49C-4PY/H52A/C106D Mutant) in Copper (Cu) Substituted Form, PDB code: 8zyg was solved by Y.Morita, H.Kubo, R.Matsumoto, N.Fujieda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.08
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.67, 57.57, 75.87, 90, 90, 90
R / Rfree (%)	n/a / n/a

The binding sites of Copper atom in the Crystal Structure of A Cupin Protein (TM1459, I49C-4PY/H52A/C106D Mutant) in Copper (Cu) Substituted Form (pdb code 8zyg). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of A Cupin Protein (TM1459, I49C-4PY/H52A/C106D Mutant) in Copper (Cu) Substituted Form, PDB code: 8zyg:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Crystal Structure of A Cupin Protein (TM1459, I49C-4PY/H52A/C106D Mutant) in Copper (Cu) Substituted Form


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of A Cupin Protein (TM1459, I49C-4PY/H52A/C106D Mutant) in Copper (Cu) Substituted Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu202 b:12.7 occ:0.90 O A:HOH378 1.8 37.0 1.0 NE2 A:HIS58 2.0 14.1 1.0 NE2 A:HIS54 2.1 12.4 1.0 NE2 A:HIS92 2.1 12.5 1.0 O A:HOH347 2.2 28.2 1.0 CE1 A:HIS92 3.0 12.7 1.0 CE1 A:HIS54 3.0 12.2 1.0 CD2 A:HIS58 3.0 13.1 1.0 CE1 A:HIS58 3.0 14.6 1.0 HE1 A:HIS92 3.1 15.3 1.0 CD2 A:HIS54 3.1 12.4 1.0 HE1 A:HIS54 3.1 14.6 1.0 CD2 A:HIS92 3.2 12.3 1.0 HD2 A:HIS58 3.2 15.7 1.0 HE1 A:HIS58 3.2 17.5 1.0 HD2 A:HIS54 3.4 14.9 1.0 HD2 A:HIS92 3.4 14.8 1.0 O A:HOH368 3.9 21.0 1.0 O A:HOH367 4.0 20.0 1.0 ND1 A:HIS92 4.1 11.7 1.0 ND1 A:HIS58 4.2 13.6 1.0 ND1 A:HIS54 4.2 11.7 1.0 CG A:HIS58 4.2 12.4 1.0 O A:HOH400 4.2 25.9 1.0 CG A:HIS54 4.2 12.1 1.0 CG A:HIS92 4.3 11.2 1.0 HE2 A:PHE94 4.6 26.0 1.0 O A:HOH305 4.7 61.9 1.0 HE1 A:TRP56 4.8 15.6 1.0 O A:HOH416 4.8 39.8 1.0 HD1 A:HIS92 4.9 14.0 1.0 HD1 A:HIS54 4.9 14.0 1.0 HD1 A:HIS58 4.9 16.3 1.0 HB3 A:ALA52 5.0 24.3 1.0

Copper binding site 2 out of 2 in the Crystal Structure of A Cupin Protein (TM1459, I49C-4PY/H52A/C106D Mutant) in Copper (Cu) Substituted Form


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of A Cupin Protein (TM1459, I49C-4PY/H52A/C106D Mutant) in Copper (Cu) Substituted Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu202 b:13.4 occ:0.91 O B:HOH392 1.8 39.6 1.0 NE2 B:HIS58 2.0 12.7 1.0 NE2 B:HIS92 2.0 12.7 1.0 NE2 B:HIS54 2.1 13.5 1.0 CE1 B:HIS92 3.0 12.7 1.0 CE1 B:HIS54 3.0 12.6 1.0 CE1 B:HIS58 3.0 13.4 1.0 CD2 B:HIS58 3.1 12.8 1.0 HE1 B:HIS92 3.1 15.3 1.0 CD2 B:HIS92 3.1 12.9 1.0 CD2 B:HIS54 3.2 13.2 1.0 HE1 B:HIS54 3.2 15.1 1.0 HE1 B:HIS58 3.2 16.1 1.0 HD2 B:HIS58 3.2 15.3 1.0 HD2 B:HIS92 3.4 15.5 1.0 HD2 B:HIS54 3.4 15.8 1.0 O B:HOH374 3.9 25.5 1.0 O B:HOH377 4.1 26.8 1.0 ND1 B:HIS92 4.1 12.3 1.0 ND1 B:HIS58 4.1 13.2 1.0 ND1 B:HIS54 4.2 12.8 1.0 CG B:HIS58 4.2 11.4 1.0 CG B:HIS92 4.2 12.0 1.0 CG B:HIS54 4.3 12.5 1.0 HE2 B:PHE94 4.5 22.1 1.0 HB3 B:ALA52 4.8 30.8 1.0 HE1 B:TRP56 4.8 17.2 1.0 HD1 B:HIS92 4.9 14.8 1.0 HD1 B:HIS58 4.9 15.9 1.0 HD1 B:HIS54 4.9 15.3 1.0

Y.Morita, H.Kubo, R.Matsumoto, N.Fujieda. Copper Center in Artificial Non-Heme Metalloenzyme To Be Published.